Protein folding rates and stability: how much is there beyond size?

D De Sancho, U Doshi, V Munoz - Journal of the American …, 2009 - ACS Publications
An intriguing feature of protein folding is that the overall behavior obeys simple physical
rules, but the finer details show a great deal of complexity. The scaling of thermodynamic …

Globular protein folding in vitro and in vivo

M Gruebele, K Dave, S Sukenik - Annual review of biophysics, 2016 - annualreviews.org
In vitro, computational, and theoretical studies of protein folding have converged to paint a
rich and complex energy landscape. This landscape is sensitively modulated by …

Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

LA Mirny, V Abkevich, EI Shakhnovich - Folding and design, 1996 - cell.com
Backgound: The role of intermediates in protein folding has been a matter of great
controversy. Although it was widely believed that intermediates play a key role in minimizing …

Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge

KS Hingorani, LM Gierasch - Current opinion in structural biology, 2014 - Elsevier
Highlights•This review discusses how folding in the test tube differs from folding in vivo.•New
research is shedding light on the complex in vivo folding landscape.•Many selective …

The fundamentals of protein folding: bringing together theory and experiment

CM Dobson, M Karplus - Current opinion in structural biology, 1999 - Elsevier
Experimental and theoretical studies together are providing insights into the mechanism by
which proteins fold. Our present knowledge of the essential aspects of the folding reaction is …

How well can simulation predict protein folding kinetics and thermodynamics?

CD Snow, EJ Sorin, YM Rhee… - Annu. Rev. Biophys …, 2005 - annualreviews.org
▪ Abstract Simulation of protein folding has come a long way in five years. Notably, new
quantitative comparisons with experiments for small, rapidly folding proteins have become …

Behind the folding funnel diagram

M Karplus - Nature chemical biology, 2011 - nature.com
This Commentary clarifies the meaning of the funnel diagram, which has been widely cited
in papers on protein folding. To aid in the analysis of the funnel diagram, this Commentary …

Is there a unifying mechanism for protein folding?

V Daggett, AR Fersht - Trends in biochemical sciences, 2003 - cell.com
Proteins appear to fold by diverse pathways, but variations of a simple mechanism–
nucleation-condensation–describe the overall features of folding of most domains. In …

Is protein folding a thermodynamically unfavorable, active, energy-dependent process?

I Sorokina, AR Mushegian, EV Koonin - International journal of molecular …, 2022 - mdpi.com
The prevailing current view of protein folding is the thermodynamic hypothesis, under which
the native folded conformation of a protein corresponds to the global minimum of Gibbs free …

General mechanism of two-state protein folding kinetics

GC Rollins, KA Dill - Journal of the American Chemical Society, 2014 - ACS Publications
We describe here a general model of the kinetic mechanism of protein folding. In the Foldon
Funnel Model, proteins fold in units of secondary structures, which form sequentially along …