Experiment and theory highlight role of native state topology in SH3 folding
DS Riddle, VP Grantcharova, JV Santiago… - nature structural …, 1999 - nature.com
We use a combination of experiments, computer simulations and simple model calculations
to characterize, first, the folding transition state ensemble of the src SH3 domain, and …
to characterize, first, the folding transition state ensemble of the src SH3 domain, and …
Preorganized secondary structure as an important determinant of fast protein folding
JK Myers, TG Oas - Nature structural biology, 2001 - nature.com
The folding and unfolding kinetics of the B-domain of staphylococcal protein A, a small three-
helix bundle protein, were probed by NMR. The lineshape of a single histidine resonance …
helix bundle protein, were probed by NMR. The lineshape of a single histidine resonance …
Protein folding: progress made and promises ahead
SE Radford - Trends in biochemical sciences, 2000 - cell.com
Over the past 25 years, enormous breakthroughs have been made in understanding protein
folding mechanisms. We have now reached an exciting stage, with consensuses beginning …
folding mechanisms. We have now reached an exciting stage, with consensuses beginning …
A breakdown of symmetry in the folding transition state of protein L
DE Kim, C Fisher, D Baker - Journal of molecular biology, 2000 - Elsevier
The 62 residue IgG binding domain of protein L consists of a central α-helix packed on a four-
stranded β-sheet formed by N and C-terminal β-hairpins. The overall topology of the protein …
stranded β-sheet formed by N and C-terminal β-hairpins. The overall topology of the protein …
[BOOK][B] Protein folding kinetics: biophysical methods
B Nölting - 2005 - books.google.com
Protein Folding Kinetics-Biophysical Methods (2nd Edition) gives a deep insight into the
principles and concepts of the kinetic and structural resolution of fast chemical and …
principles and concepts of the kinetic and structural resolution of fast chemical and …
Energy functions for protein design: adjustment with protein–protein complex affinities, models for the unfolded state, and negative design of solubility and specificity
N Pokala, TM Handel - Journal of molecular biology, 2005 - Elsevier
The development of the EGAD program and energy function for protein design is described.
In contrast to most protein design methods, which require several empirical parameters or …
In contrast to most protein design methods, which require several empirical parameters or …
High pressure fosters protein refolding from aggregates at high concentrations
RJ St. John, JF Carpenter… - Proceedings of the …, 1999 - National Acad Sciences
High hydrostatic pressures (1–2 kbar), combined with low, nondenaturing concentrations of
guanidine hydrochloride (GdmHCl) foster disaggregation and refolding of denatured and …
guanidine hydrochloride (GdmHCl) foster disaggregation and refolding of denatured and …
Ratiometric single-molecule studies of freely diffusing biomolecules
▪ Abstract We outline recent developments in biological single-molecule fluorescence
detection with particular emphasis on observations by ratiometric fluorescence resonance …
detection with particular emphasis on observations by ratiometric fluorescence resonance …
Reduced models of proteins and their applications
A Kolinski, J Skolnick - Polymer, 2004 - Elsevier
Reduced computer modeling of proteins now has a history of about 30 years. In spite of the
enormous increase in computing abilities, reduced models are still very important tools for …
enormous increase in computing abilities, reduced models are still very important tools for …
The construction of an amino acid network for understanding protein structure and function
Amino acid networks (AANs) are undirected networks consisting of amino acid residues and
their interactions in three-dimensional protein structures. The analysis of AANs provides …
their interactions in three-dimensional protein structures. The analysis of AANs provides …