The equilibrium and kinetic folding properties of a small oncogene product, P13MTCP1, of
novel topology have been investigated using perturbation by guanidine hydrochloride and …

We report the distribution of hydrophobic core contacts during the folding reaction transition
state for villin 14T, a small 126-residue protein domain. The solution structure of villin 14T …

Background Contact order is a topological descriptor that has been shown to be correlated
with several interesting protein properties such as protein folding rates and protein transition …

A class of models that represents a protein chain as a sequence of “folded” and “unfolded”
residues has recently been used to correlate rates and mechanisms of protein folding with …

Protein‐folding mechanisms of two small globular proteins, IgG binding domain of protein G
and α spectrin SH3 domain are investigated via Brownian dynamics simulations with a …

The approach of comparing folding and folding/binding processes is exquisitely poised to
narrow down the regions of the sequence that drive protein folding. We have dissected the …

The N-terminal β-hairpin sequence of ubiquitin has been implicated as a folding nucleation
site. To extend and stabilise the ubiquitin folding nucleus, we have inserted an …

We study the thermodynamic behavior of a model protein with 54 amino acidsthat is
designed to form a three-helix bundle in its native state. The model contains three types of …

To quantitatively categorize protein structures, we developed a quantitative coarse-grained
model of protein structures with a novel amino acid network, the interaction selective …

A quantitative, property-based approach to protein sequence analysis is presented,
grounded in Fourier analysis and signal-processing methodologies. The resulting tools are …