A surprising simplicity to protein folding
D Baker - Nature, 2000 - nature.com
The polypeptide chains that make up proteins have thousands of atoms and hence millions
of possible inter-atomic interactions. It might be supposed that the resulting complexity …
of possible inter-atomic interactions. It might be supposed that the resulting complexity …
Protein contact networks: an emerging paradigm in chemistry
Topology is at the very heart of chemistry. This stems from the fact that chemical thought,
since its prescientific alchemic origins, focused on the mutual relations between different …
since its prescientific alchemic origins, focused on the mutual relations between different …
A simple model for calculating the kinetics of protein folding from three-dimensional structures
An elementary statistical mechanical model was used to calculate the folding rates for 22
proteins from their known three-dimensional structures. In this model, residues come into …
proteins from their known three-dimensional structures. In this model, residues come into …
Fast kinetics and mechanisms in protein folding
▪ Abstract This review describes how kinetic experiments using techniques with dramatically
improved time resolution have contributed to understanding mechanisms in protein folding …
improved time resolution have contributed to understanding mechanisms in protein folding …
Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2
AA Deniz, TA Laurence, GS Beligere… - Proceedings of the …, 2000 - National Acad Sciences
We report single-molecule folding studies of a small, single-domain protein, chymotrypsin
inhibitor 2 (CI2). CI2 is an excellent model system for protein folding studies and has been …
inhibitor 2 (CI2). CI2 is an excellent model system for protein folding studies and has been …
The middle way
RB Laughlin, D Pines, J Schmalian… - Proceedings of the …, 2000 - National Acad Sciences
Mesoscopic organization in soft, hard, and biological matter is examined in the context of our
present understanding of the principles responsible for emergent organized behavior …
present understanding of the principles responsible for emergent organized behavior …
Critical role of β-hairpin formation in protein G folding
Abstract Comparison of the folding mechanisms of proteins with similar structures but very
different sequences can provide fundamental insights into the determinants of protein …
different sequences can provide fundamental insights into the determinants of protein …
Ab initio protein structure prediction: progress and prospects
▪ Abstract Considerable recent progress has been made in the field of ab initio protein
structure prediction, as witnessed by the third Critical Assessment of Structure Prediction …
structure prediction, as witnessed by the third Critical Assessment of Structure Prediction …
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
Guided by recent experimental results suggesting that protein-folding rates and mechanisms
are determined largely by native-state topology, we develop a simple model for protein …
are determined largely by native-state topology, we develop a simple model for protein …
Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics
The fastest simple, single domain proteins fold a million times more rapidly than the slowest.
Ultimately this broad kinetic spectrum is determined by the amino acid sequences that …
Ultimately this broad kinetic spectrum is determined by the amino acid sequences that …