Optical tweezers in single-molecule biophysics
CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …
studies. In this Primer, we first review the physical principles of optical tweezers and the …
An overview of the molecular mechanisms of recombinational DNA repair
SC Kowalczykowski - Cold Spring Harbor Perspectives …, 2015 - cshperspectives.cshlp.org
Recombinational DNA repair is a universal aspect of DNA metabolism and is essential for
genomic integrity. It is a template-directed process that uses a second chromosomal copy …
genomic integrity. It is a template-directed process that uses a second chromosomal copy …
Nanocaged enzymes with enhanced catalytic activity and increased stability against protease digestion
Cells routinely compartmentalize enzymes for enhanced efficiency of their metabolic
pathways. Here we report a general approach to construct DNA nanocaged enzymes for …
pathways. Here we report a general approach to construct DNA nanocaged enzymes for …
[PDF][PDF] Independent and stochastic action of DNA polymerases in the replisome
JE Graham, KJ Marians, SC Kowalczykowski - Cell, 2017 - cell.com
It has been assumed that DNA synthesis by the leading-and lagging-strand polymerases in
the replisome must be coordinated to avoid the formation of significant gaps in the nascent …
the replisome must be coordinated to avoid the formation of significant gaps in the nascent …
Rotation tracking of genome-processing enzymes using DNA origami rotors
Many genome-processing reactions, including transcription, replication and repair, generate
DNA rotation. Methods that directly measure DNA rotation, such as rotor bead tracking …
DNA rotation. Methods that directly measure DNA rotation, such as rotor bead tracking …
Single-molecule analysis and engineering of DNA motors
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …
work and, in doing so, perform critical cellular functions such as DNA replication and …
Restart could optimize the probability of success in a Bernoulli trial
S Belan - Physical review letters, 2018 - APS
The recently noticed ability of restart to reduce the expected completion time of first-passage
processes allows appealing opportunities for performance improvement in a variety of …
processes allows appealing opportunities for performance improvement in a variety of …
Theoretical perspectives on biological machines
Many biological functions are executed by molecular machines, which like man-made
motors are powered by chemical energy, released by adenosine triphosphate hydrolysis …
motors are powered by chemical energy, released by adenosine triphosphate hydrolysis …
Colloquium: Random first order transition theory concepts in biology and physics
TR Kirkpatrick, D Thirumalai - Reviews of Modern Physics, 2015 - APS
The routine transformation of a liquid, as it is rapidly cooled, resulting in glass formation, is
remarkably complex. A theoretical explanation of the dynamics associated with this process …
remarkably complex. A theoretical explanation of the dynamics associated with this process …
Activities of gyrase and topoisomerase IV on positively supercoiled DNA
RE Ashley, A Dittmore, SA McPherson… - Nucleic acids …, 2017 - academic.oup.com
Although bacterial gyrase and topoisomerase IV have critical interactions with positively
supercoiled DNA, little is known about the actions of these enzymes on overwound …
supercoiled DNA, little is known about the actions of these enzymes on overwound …