Theory of protein folding: the energy landscape perspective
JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …
explored in computer simulations of simple exact lattice models. These models represent …
Funnels, pathways, and the energy landscape of protein folding: a synthesis
JD Bryngelson, JN Onuchic, ND Socci… - Proteins: Structure …, 1995 - Wiley Online Library
The understanding, and even the description of protein folding is impeded by the complexity
of the process. Much of this complexity can be described and understood by taking a …
of the process. Much of this complexity can be described and understood by taking a …
Theory of protein folding
JN Onuchic, PG Wolynes - Current opinion in structural biology, 2004 - Elsevier
Protein folding should be complex. Proteins organize themselves into specific three-
dimensional structures, through a myriad of conformational changes. The classical view of …
dimensional structures, through a myriad of conformational changes. The classical view of …
Speeding molecular recognition by using the folding funnel: the fly-casting mechanism
BA Shoemaker, JJ Portman… - Proceedings of the …, 2000 - National Acad Sciences
Protein folding and binding are kindred processes. Many proteins in the cell are unfolded, so
folding and function are coupled. This paper investigates how binding kinetics is influenced …
folding and function are coupled. This paper investigates how binding kinetics is influenced …
How does a protein fold?
AS˘ ali, E Shakhnovich, M Karplus - nature, 1994 - nature.com
THE number of all possible conformations of a polypeptide chain is too large to be sampled
exhaustively. Nevertheless, protein sequences do fold into unique native states in seconds …
exhaustively. Nevertheless, protein sequences do fold into unique native states in seconds …
The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics
OM Becker, M Karplus - The Journal of chemical physics, 1997 - pubs.aip.org
Topological characteristics of multidimensional potential energy surfaces are explored and
the full conformation space is mapped on the set of local minima. This map partitions …
the full conformation space is mapped on the set of local minima. This map partitions …
Protein ensembles: how does nature harness thermodynamic fluctuations for life? The diverse functional roles of conformational ensembles in the cell
All soluble proteins populate conformational ensembles that together constitute the native
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
Condensates in RNA repeat sequences are heterogeneously organized and exhibit reptation dynamics
Although it is known that RNA undergoes liquid–liquid phase separation, the interplay
between the molecular driving forces and the emergent features of the condensates, such as …
between the molecular driving forces and the emergent features of the condensates, such as …
Molecular crowding enhances native state stability and refolding rates of globular proteins
The presence of macromolecules in cells geometrically restricts the available space for
poplypeptide chains. To study the effects of macromolecular crowding on folding …
poplypeptide chains. To study the effects of macromolecular crowding on folding …