Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms

TL Liu, S Upadhyayula, DE Milkie, V Singh, K Wang… - Science, 2018 - science.org
INTRODUCTION Organisms live by means of the complex, dynamic, three-dimensional (3D)
interplay between millions of components, from the molecular to the multicellular. Visualizing …

Microscopy image browser: a platform for segmentation and analysis of multidimensional datasets

I Belevich, M Joensuu, D Kumar, H Vihinen… - PLoS …, 2016 - journals.plos.org
Understanding the structure–function relationship of cells and organelles in their natural
context requires multidimensional imaging. As techniques for multimodal 3-D imaging have …

An objective comparison of cell-tracking algorithms

V Ulman, M Maška, KEG Magnusson, O Ronneberger… - Nature …, 2017 - nature.com
We present a combined report on the results of three editions of the Cell Tracking
Challenge, an ongoing initiative aimed at promoting the development and objective …

[HTML][HTML] Inflation-collapse dynamics drive patterning and morphogenesis in intestinal organoids

NP Tallapragada, HM Cambra, T Wald, SK Jalbert… - Cell stem cell, 2021 - cell.com
How stem cells self-organize to form structured tissues is an unsolved problem. Intestinal
organoids offer a model of self-organization as they generate stem cell zones (SCZs) of …

Enhancer priming enables fast and sustained transcriptional responses to notch signaling

J Falo-Sanjuan, NC Lammers, HG Garcia, SJ Bray - Developmental Cell, 2019 - cell.com
Information from developmental signaling pathways must be accurately decoded to
generate transcriptional outcomes. In the case of Notch, the intracellular domain (NICD) …

Mountain railway alignment optimization with bidirectional distance transform and genetic algorithm

W Li, H Pu, P Schonfeld, J Yang… - … ‐Aided Civil and …, 2017 - Wiley Online Library
Various challenging constraints must be satisfied in railway alignment design for
topographically complex mountainous regions. The alignment design for such environments …

[HTML][HTML] Quantifying receptor trafficking and colocalization with confocal microscopy

JA Pike, IB Styles, JZ Rappoport, JK Heath - Methods, 2017 - Elsevier
Confocal microscopy is a powerful tool for the study of cellular receptor trafficking and
endocytosis. Unbiased and robust image analysis workflows are required for the …

Direct simulations of pore-scale water transport through diffusion media

FC Cetinbas, RK Ahluwalia, AD Shum… - Journal of The …, 2019 - iopscience.iop.org
A numerical framework is developed for simulating pore-scale liquid water transport in
polymer electrolyte fuel cell (PEFC) diffusion media (DM) as measured by X-ray computed …

Notch-dependent and-independent transcription are modulated by tissue movements at gastrulation

J Falo-Sanjuan, S Bray - Elife, 2022 - elifesciences.org
Cells sense and integrate external information from diverse sources that include mechanical
cues. Shaping of tissues during development may thus require coordination between …

Dose-volume histogram prediction using density estimation

JS Munter, J Sjölund - Physics in Medicine & Biology, 2015 - iopscience.iop.org
Abstract Knowledge of what dose-volume histograms can be expected for a previously
unseen patient could increase consistency and quality in radiotherapy treatment planning …