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10 pages, 1203 KiB  
Article
Formulation of a Commercial Quality Index for Avocado Produced in an Inter-Andean Valley
by John Peter Aguirre-Landa, Henrry Wilfredo Agreda-Cerna, David Quispe-Choque, Alfredo Prado-Canchari and Liliana Rodriguez Cardenas
Horticulturae 2024, 10(8), 783; https://doi.org/10.3390/horticulturae10080783 (registering DOI) - 25 Jul 2024
Abstract
This study aimed to formulate a commercial quality index (CQI) for avocados (Persea americana Mill) produced in an inter-Andean valley in southern Peru. Thirty-eight commercial quality parameters of Hass and Fuerte avocados were evaluated under the marketing and export protocols approved in [...] Read more.
This study aimed to formulate a commercial quality index (CQI) for avocados (Persea americana Mill) produced in an inter-Andean valley in southern Peru. Thirty-eight commercial quality parameters of Hass and Fuerte avocados were evaluated under the marketing and export protocols approved in the Codex Alimentarius CXS 197-1995 issued by FAO and the Peruvian technical standard NTP 011.018. The index was formulated using information gathered from 44 experts in the Apurimac region. To weight the commercial quality parameters, the Delphi method was used, with the cooperation of expert producers and marketers, from which a weighted equation was formulated for the commercial quality index of Hass (CQIh) and Fuerte (CQIf) avocados. Fifteen parameters of interest were found for the formulation of the quality indexes for both varieties, which reported more than 50% coincidence among experts, based on physical and sensory evaluation. The CQI proposal would be a tool to help improve the quality attributes of avocado growers. Full article
(This article belongs to the Section Fruit Production Systems)
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<p>Fuerte and Hass Avocado.</p>
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<p>Avocado varieties’ producing areas.</p>
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26 pages, 2479 KiB  
Article
The Relationship between Microbial Communities in Coffee Fermentation and Aroma with Metabolite Attributes of Finished Products
by Tatsaporn Todhanakasem, Ngo Van Tai, Soisuda Pornpukdeewattana, Theppanya Charoenrat, Briana M. Young and Songsak Wattanachaisaereekul
Foods 2024, 13(15), 2332; https://doi.org/10.3390/foods13152332 - 24 Jul 2024
Abstract
Coffee is a critical agricultural commodity and is used to produce premium beverages enjoyed by people worldwide. The microbiome of coffee beans has proven to be an essential tool that improves the flavor profile of coffee by creating aromatic flavor compounds through natural [...] Read more.
Coffee is a critical agricultural commodity and is used to produce premium beverages enjoyed by people worldwide. The microbiome of coffee beans has proven to be an essential tool that improves the flavor profile of coffee by creating aromatic flavor compounds through natural fermentation. This study investigated the natural microbial consortium during the wet process fermentation of coffee onsite in Thailand in order to identify the correlation between microbial diversity and biochemical characteristics including flavor, aroma, and metabolic attributes. Our study found 64 genera of bacteria and 59 genera of yeast/ fungi present during the fermentation process. Group of microbes, mainly yeast and lactic acid bacteria, that predominated in the process were significantly correlated with preferable flavor and aroma compounds, including linalyl formate, linalool, cis-isoeugenol, trans-geraniol, and (-)-isopulegol. Some of the detected metabolites were found to be active compounds which could play a role in health. Full article
(This article belongs to the Special Issue Application of Fermentation Biotechnology in Food Science)
23 pages, 1129 KiB  
Article
Data Analytics for Predicting Situational Developments in Smart Cities: Assessing User Perceptions
by Alexander A. Kharlamov and Maria Pilgun
Sensors 2024, 24(15), 4810; https://doi.org/10.3390/s24154810 - 24 Jul 2024
Abstract
The analysis of large volumes of data collected from heterogeneous sources is increasingly important for the development of megacities, the advancement of smart city technologies, and ensuring a high quality of life for citizens. This study aimed to develop algorithms for analyzing and [...] Read more.
The analysis of large volumes of data collected from heterogeneous sources is increasingly important for the development of megacities, the advancement of smart city technologies, and ensuring a high quality of life for citizens. This study aimed to develop algorithms for analyzing and interpreting social media data to assess citizens’ opinions in real time and for verifying and examining data to analyze social tension and predict the development of situations during the implementation of urban projects. The developed algorithms were tested using an urban project in the field of transportation system development. The study’s material included data from social networks, messenger channels and chats, video hosting platforms, blogs, microblogs, forums, and review sites. An interdisciplinary approach was utilized to analyze the data, employing tools such as Brand Analytics, TextAnalyst 2.32, GPT-3.5, GPT-4, GPT-4o, and Tableau. The results of the data analysis showed identical outcomes, indicating a neutral perception among users and the absence of social tension surrounding the project’s implementation, allowing for the prediction of a calm development of the situation. Additionally, recommendations were developed to avert potential conflicts and eliminate sources of social tension for decision-making purposes. Full article
12 pages, 743 KiB  
Article
Prognostic Utility of the Flow Cytometry and Clonality Analysis Results for Feline Lymphomas
by Sheena Kapoor, Sushmita Sen, Josephine Tsang, Qi Jing Yap, Stanley Park, Jerry Cromarty, Deanna Swartzfager, Kevin Choy, Sungwon Lim, Jamin Koo and Ilona Holcomb
Vet. Sci. 2024, 11(8), 331; https://doi.org/10.3390/vetsci11080331 - 24 Jul 2024
Abstract
Feline lymphoma, a prevalent cancer in cats, exhibits varied prognoses influenced by anatomical site and cellular characteristics. In this study, we investigated the utility of flow cytometry and clonality analysis via PCR for antigen receptor rearrangement (PARR) with respect to characterizing the disease [...] Read more.
Feline lymphoma, a prevalent cancer in cats, exhibits varied prognoses influenced by anatomical site and cellular characteristics. In this study, we investigated the utility of flow cytometry and clonality analysis via PCR for antigen receptor rearrangement (PARR) with respect to characterizing the disease and predicting prognosis. For this purpose, we received fine needle aspirates and/or blood from 438 feline patients, which were subjected to flow cytometry analysis and PARR. We used a subset of the results from patients with confirmed B- or T-cell lymphomas for comparison to cytological or histological evaluation (n = 53). Using them as a training set, we identified the optimal set of flow cytometry parameters, namely forward scatter thresholds, for cell size categorization by correlating with cytology-defined sizes. Concordance with cytological sizing among this training set was 82%. Furthermore, 90% concordance was observed when the proposed cell sizing was tested on an independent test set (n = 24), underscoring the reliability of the proposed approach. Additionally, lymphoma subtypes defined by flow cytometry and PARR demonstrated significant survival differences, validating the prognostic utility of these methods. The proposed methodology achieves high concordance with cytological evaluations and provides an additional tool for the characterization and management of feline lymphoproliferative diseases. Full article
(This article belongs to the Special Issue New Insight into Canine and Feline Tumor)
15 pages, 8381 KiB  
Article
Aerodynamic Analysis of Fixed-Wing Unmanned Aerial Vehicles Moving in Swarm
by Ahmet Talat İnan and Mustafa Ceylan
Appl. Sci. 2024, 14(15), 6463; https://doi.org/10.3390/app14156463 - 24 Jul 2024
Abstract
This paper presents a close-formation flight of two unmanned aerial vehicles (UAVs) and the aim of the study is to improve the understanding of the vortex effects between fixed-wing UAVs in a swarm using computational fluid dynamics (CFD) tools. To validate the numerical [...] Read more.
This paper presents a close-formation flight of two unmanned aerial vehicles (UAVs) and the aim of the study is to improve the understanding of the vortex effects between fixed-wing UAVs in a swarm using computational fluid dynamics (CFD) tools. To validate the numerical method, results of a variable-density wind tunnel test from the literature were used. This numerical CFD analysis was used to determine the lift coefficient (CL) and the drag coefficient (CD) values for a single UAV at various angles of attack. When examining the aerodynamic impact areas behind the UAV, the longitudinal distance between the two UAVs is not particularly effective for close flight. Therefore, CFD analyses were carried out on the two UAVs for both vertical and lateral distances. The optimum position for close-formation flight was identified using CL/CD ratios. The results of the analysis indicate that the most effective flights, across all lateral positions, occur when the two UAVs are vertically at the same height. In terms of aerodynamic efficiency, the most effective points for close-formation flight for wingspan b are at lateral distances of 0.875 b and 1 b. At these positions, flight efficiency can be increased by approximately 11.5%. Full article
(This article belongs to the Section Aerospace Science and Engineering)
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<p>Pictures of the selected geometry: (<b>a</b>) real image of model; (<b>b</b>) simplified geometry.</p>
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<p>Element types used in finite volume analysis.</p>
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<p>The mesh structure of boundary layer.</p>
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<p>Comparison of CFD analysis results with experimental data for NACA 4415 airfoil: (<b>a</b>) lift coefficient; (<b>b</b>) drag coefficient.</p>
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<p>C<sub>L</sub>/C<sub>D</sub> variation with angle of attack for single UAV.</p>
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<p>Distribution of the y components of the velocity at a one-UAV distance behind the plane UAV.</p>
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<p>Distribution of the velocity’s y components over planes at various distances in the UAV’s rear area.</p>
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<p>The relative position of the two UAVs in the close-formation flight and coordinate system.</p>
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<p>The lateral sequences in the close-formation flight for two UAVs.</p>
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<p>The vertical sequences in the close-formation flight for two UAVs.</p>
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<p>Mesh independence graph.</p>
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<p>Mosaic mesh distribution between two UAVs.</p>
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<p><span class="html-italic">C<sub>L</sub></span> vs. lateral distances.</p>
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<p><span class="html-italic">C<sub>D</sub></span> vs. lateral distances.</p>
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<p><span class="html-italic">C<sub>L</sub></span>/<span class="html-italic">C<sub>D</sub></span> vs. lateral distances.</p>
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<p>Histogram for aerodynamic efficiency variation for analysis numbers.</p>
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24 pages, 384 KiB  
Article
Decarbonization in the Oil and Gas Sector: The Role of Power Purchase Agreements and Renewable Energy Certificates
by Stamatios K. Chrysikopoulos, Panos T. Chountalas, Dimitrios A. Georgakellos and Athanasios G. Lagodimos
Sustainability 2024, 16(15), 6339; https://doi.org/10.3390/su16156339 - 24 Jul 2024
Abstract
This study examines the adoption of Power Purchase Agreements (PPAs) and Renewable Energy Certificates (RECs) as strategic tools for decarbonization in the oil and gas sector. Focusing on the 21 largest oil and gas companies across Europe, North America, and South America, the [...] Read more.
This study examines the adoption of Power Purchase Agreements (PPAs) and Renewable Energy Certificates (RECs) as strategic tools for decarbonization in the oil and gas sector. Focusing on the 21 largest oil and gas companies across Europe, North America, and South America, the analysis reveals varied adoption rates and strategic emphases between regions. European companies exhibit robust integration of PPAs and RECs to expand renewable energy capacities and reduce emissions, aligning closely with aggressive EU climate policies. In contrast, American companies show a cautious approach, focusing more on emission reduction from existing operations than on renewable expansions. The study’s findings indicate that, while both regions are advancing in their decarbonization efforts, European companies are leading with more defined renewable energy targets and comprehensive low-carbon strategies. This research contributes to understanding how different regulatory environments and market conditions influence corporate strategies towards sustainable energy transitions in traditionally hard-to-abate industries. Full article
39 pages, 2034 KiB  
Review
Tumor Neoepitope-Based Vaccines: A Scoping Review on Current Predictive Computational Strategies
by Luiz Gustavo do Nascimento Rocha, Paul Anderson Souza Guimarães, Maria Gabriela Reis Carvalho and Jeronimo Conceição Ruiz
Vaccines 2024, 12(8), 836; https://doi.org/10.3390/vaccines12080836 - 24 Jul 2024
Abstract
Therapeutic cancer vaccines have been considered in recent decades as important immunotherapeutic strategies capable of leading to tumor regression. In the development of these vaccines, the identification of neoepitopes plays a critical role, and different computational methods have been proposed and employed to [...] Read more.
Therapeutic cancer vaccines have been considered in recent decades as important immunotherapeutic strategies capable of leading to tumor regression. In the development of these vaccines, the identification of neoepitopes plays a critical role, and different computational methods have been proposed and employed to direct and accelerate this process. In this context, this review identified and systematically analyzed the most recent studies published in the literature on the computational prediction of epitopes for the development of therapeutic vaccines, outlining critical steps, along with the associated program’s strengths and limitations. A scoping review was conducted following the PRISMA extension (PRISMA-ScR). Searches were performed in databases (Scopus, PubMed, Web of Science, Science Direct) using the keywords: neoepitope, epitope, vaccine, prediction, algorithm, cancer, and tumor. Forty-nine articles published from 2012 to 2024 were synthesized and analyzed. Most of the identified studies focus on the prediction of epitopes with an affinity for MHC I molecules in solid tumors, such as lung carcinoma. Predicting epitopes with class II MHC affinity has been relatively underexplored. Besides neoepitope prediction from high-throughput sequencing data, additional steps were identified, such as the prioritization of neoepitopes and validation. Mutect2 is the most used tool for variant calling, while NetMHCpan is favored for neoepitope prediction. Artificial/convolutional neural networks are the preferred methods for neoepitope prediction. For prioritizing immunogenic epitopes, the random forest algorithm is the most used for classification. The performance values related to the computational models for the prediction and prioritization of neoepitopes are high; however, a large part of the studies still use microbiome databases for training. The in vitro/in vivo validations of the predicted neoepitopes were verified in 55% of the analyzed studies. Clinical trials that led to successful tumor remission were identified, highlighting that this immunotherapeutic approach can benefit these patients. Integrating high-throughput sequencing, sophisticated bioinformatics tools, and rigorous validation methods through in vitro/in vivo assays as well as clinical trials, the tumor neoepitope-based vaccine approach holds promise for developing personalized therapeutic vaccines that target specific tumor cancers. Full article
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<p>PRISMA flow diagram.</p>
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<p>Critical steps flowchart. The figure presents the challenges (<b>left</b>) and current progress (<b>right</b>) of each of the critical steps in the identification of immunogenic neoepitopes.</p>
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<p>The occurrence of the type of tumor among articles. The horizontal (x) axis represents different groups of types of tumors, while the vertical (y) axis indicates the number of occurrences of each type of tumor across the articles. (<b>A</b>) lung carcinoma; (<b>B</b>) breast carcinoma, colorectal carcinoma, liver carcinoma, melanoma, ovarian carcinoma; (<b>C</b>) gastric adenocarcinoma; (<b>D</b>) glioblastoma, pancreatic carcinoma; (<b>E</b>) B-cell lymphocytic leukemia, glioma, neuroblastoma, prostate carcinoma; (<b>F</b>) Burkitt’s lymphoma, cervical adenocarcinoma, cholangiocarcinoma, chronic lymphocytic leukemia, chronic myeloid leukemia, colorectal adenocarcinoma, embryonal, endometrial, mesothelioma, myeloblastoma, osteosarcoma, renal carcinoma, squamous cell carcinoma, teratoid/rhabditoid tumor.</p>
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<p>Variant calling software usage in the selected studies. The “x” axis represents the software or database, while the “y” axis represents the frequency of software utilization across the articles identified in this review.</p>
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<p>Neoepitope prediction usage in the selected studies. The horizontal (x) axis represents the neoepitope prediction programs, while the vertical (y) axis indicates the frequency of usage of each program across the articles.</p>
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<p>HLA-I allele group usage in the selected studies. The horizontal axis represents the group of alleles analyzed in the reviewed studies. The gray bars depict the count of articles utilizing alleles within the respective group, while the black bars indicate the number of alleles present in each group. (<b>A</b>) A*02:01; (<b>B</b>) A*01:01, A*03:01; (<b>C</b>) A*11:01, B*07:02, C*07:02; (<b>D</b>) A*24:02, B*08:01, B*27:05, B*35:01; (<b>E</b>) A*68:01, B*40:01, B*44:02, C*15:02; (<b>F</b>) A*26:01, B*15:01, B*18:01, B*44:03, B*51:01, C*01:02, C*02:02, C*04:01; (<b>G</b>) A*02:06, A*30:01, A*32:01, A*33:03, B*35:02, B*35:03, B*40:06, C*03:02, C*03:03, C*03:04, C*05:01, C*06:02, C*07:04, C*08:01, C*08:02; (<b>H</b>) A*02:02, A*02:05, A*23:01, A*25:01, A*29:01, A*29:02, A*30:02, A*31:01, A*33:01, A*02, B*07:05, B*13:02, B*14:01, B*15:18, B*37:01, B*38:01, B*39:01, B*45:01, B*52:01, B*54:01, B*55:01, B*55:02, B*58:01, C*07:01, C*12:02, C*12:03, C*14:02, C*15:05, C*16:01; (<b>I</b>) A*01:02, A*02:07, A*02:11, A*02:17, A*03:19, A*11:02, A*23:05, A*24:01, A*24:11, A*26:02, A*26:03, A*26:13, A*30:04, A*34:02, A*36:04, A*66:01, A*66:02, A*68:02, A*68:03, A*68:12, A*74:01, A*24, B*14:02, B*14:06, B*15:02, B*15:03, B*15:05, B*15:07, B*15:10, B*15:16, B*15:17, B*15:80, B*27:02, B*27:03, B*27:04, B*27:12, B*27:34, B*35:08, B*35:14, B*35:86, B*37:04, B*37:19, B*39:06, B*40:02, B*40:05, B*41:01, B*41:02, B*42:01, B*44:05, B*44:07, B*46:01, B*47:01, B*48:01, B*49:01, B*50:01, B*51:08, B*51:12, B*53:01, B*56:01, B*56:29, B*57:01, B*57:03, B*58:05, B*78:01, B*81:03, C*04:04, C*04:21, C*07:06, C*08:04, C*08:05, C*08:22, C*14:03, C*16:02, C*17:01, C*18:02.</p>
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<p>HLA-II allele group usage in the selected studies. The horizontal axis represents the allele group analyzed in the reviewed studies. The gray bars depict the count of articles employing alleles within the respective group, while the black bars indicate the number of alleles present in each group. (<b>A</b>) DQB1*03:01, DQB1*06:03, DRB1*12:01, DRB1*13:01; (<b>B</b>) DPB1*03:01, DPB1*04:01, DQB1*02:01, DQB1*02:02, DQB1*03:02, DQB1*03:03, DQB1*04:01, DQB1*04:02, DQB1*05:01, DQB1*06:01, DQB1*06:02, DQB1*11:01, DQB1*15:01, DRB1*01, DRB1*01:02, DRB1*03:01, DRB1*04:04, DRB1*04:05, DRB1*04:06, DRB1*07:01, DRB1*08:02, DRB1*08:03, DRB1*09:01, DRB1*11:01, DRB1*12:02, DRB1*15:01, DRB1*15:02.</p>
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12 pages, 2149 KiB  
Article
Performance of Intraoperative Contrast-Enhanced Ultrasound (Io-CEUS) in the Diagnosis of Primary Lung Cancer
by Martin Ignaz Schauer, Ernst Michael Jung, Hans-Stefan Hofmann, Natascha Platz Batista da Silva, Michael Akers and Michael Ried
Diagnostics 2024, 14(15), 1597; https://doi.org/10.3390/diagnostics14151597 - 24 Jul 2024
Abstract
Background: Suspicious tumors of the lung require specific staging, intraoperative detection, and histological confirmation. We performed an intrathoracic, intraoperative contrast-enhanced ultrasound (Io-CEUS) for characterization of lung cancer. Methods: Retrospective analysis of prospectively collected data on the application of Io-CEUS in thoracic surgery for [...] Read more.
Background: Suspicious tumors of the lung require specific staging, intraoperative detection, and histological confirmation. We performed an intrathoracic, intraoperative contrast-enhanced ultrasound (Io-CEUS) for characterization of lung cancer. Methods: Retrospective analysis of prospectively collected data on the application of Io-CEUS in thoracic surgery for patients with operable lung cancer. Analysis of the preoperative chest CT scan and FDG-PET/CT findings regarding criteria of malignancy. Immediately before lung resection, the intrathoracic Io-CEUS was performed with a contrast-enabled T-probe (6–9 MHz—L3-9i-D) on a high-performance ultrasound machine (Loqic E9, GE). In addition to intraoperative B-mode, color-coded Doppler sonography (CCDS), or power Doppler (macrovascularization) of the lung tumor, contrast enhancement (Io-CEUS) was used after venous application of 2.4–5 mL sulfur hexafluoride (SonoVue, Bracco, Italy) for dynamic recording of microvascularization. The primary endpoint was the characterization of operable lung cancer with Io-CEUS. Secondly, the results of Io-CEUS were compared with the preoperative staging. Results: The study included 18 patients with operable lung cancer, who received Io-CEUS during minimally invasive thoracic surgery immediately prior to lung resection. In the chest CT scan, the mean size of the lung tumors was 2.54 cm (extension of 0.7–4.5 cm). The mean SUV in the FDG-PET/CT was 7.6 (1.2–16.9). All lung cancers were detected using B-mode and power Doppler confirmed macrovascularization (100%) of the tumors. In addition, Io-CEUS showed an early wash-in with marginal and mostly simultaneous central contrast enhancement. Conclusions: The intrathoracic application of Io-CEUS demonstrated a peripheral and simultaneous central contrast enhancement in the early phase, which seems to be characteristic of lung cancer. In comparison to preoperative imaging, Io-CEUS was on par with the detection of malignancy and offers an additional tool for the intraoperative assessment of lung cancer before resection. Full article
(This article belongs to the Special Issue Current Challenges and Perspectives of Ultrasound)
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Figure 1
<p>Chest CT scan in axial view (<b>a</b>) and coronal view (<b>b</b>) showing a suspicious tumor in the upper lobe (red arrows). FDG-PET/CT revealed an SUV of 4.8 (<b>c</b>). In B-mode, the dimensions of the tumor can be seen (<b>d</b>). The yellow “+” marks the tumor margin. (<b>e</b>) The power Doppler with central and peripheral vessel sections. In CEUS (<b>f</b>) at t = 9 s, the central and peripheral contrast agent uptake can be seen, which increasingly spreads throughout the tumor over time (<b>g</b>) at t = 14 s. (<b>h</b>) The 3D reconstruction of the CEUS confirmed a marginal and central contrast center uptake.</p>
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<p>Chest CT-scan axial (<b>a</b>) and coronary (<b>b</b>) showed a clearly defined SPN with a diameter of 1.6 cm in the right lower lobe with an SUV of 13.7 in the FDG-PET/CT (<b>c</b>). The red arrow marks the tumor. In B-mode (<b>d</b>), we see a partially sharply demarcated, echo-heterogeneous tumor. The yellow “+” marks the tumor margin. In CCDS (<b>e</b>), a peripheral vessel section is distinguishable apically at the tumor margin and centrally. In the early contrast agent phase (<b>f</b>) at t = 12 s, a clear central and peripheral contrast can be seen, which rapidly spreads over the tumor (<b>g</b>) at t = 18 s. (<b>h</b>) The 3D reconstruction of the tumor.</p>
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<p>In the CT thorax, a clearly partially lobulated SPN can be delineated in the right lower lung lobe (<b>a</b>,<b>b</b>). The red arrow marks the tumor. In the PET-CT (<b>c</b>), the SPN appears faintly. In B-mode (<b>d</b>), a partially hypo- and partially hyperechoic structure can be delineated. (<b>e</b>). The yellow “+” marks the tumor margin. The power Doppler with peripheral and central vessel sections. In CEUS, an early peripheral contrast enhancement is observed in the wash-in phase at t = 12 s (<b>f</b>), which intensifies over time at t = 19 s (<b>g</b>). The 3D reconstruction shows central contrast agent uptake with a large void (<b>h</b>).</p>
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21 pages, 4528 KiB  
Article
The Role of Websites in Promoting Wine Tourism: An Evaluation of Romanian Wineries
by Cristiana Vîlcea, Mihaela Licurici and Liliana Popescu
Sustainability 2024, 16(15), 6336; https://doi.org/10.3390/su16156336 - 24 Jul 2024
Viewed by 48
Abstract
While aspiring to become internationally valued producers of high-quality wines, certain Romanian wineries recently turned towards wine tourism. Given the increasing role of smart devices and online-based information in holiday selection and planning, the main objective of the paper is to evaluate the [...] Read more.
While aspiring to become internationally valued producers of high-quality wines, certain Romanian wineries recently turned towards wine tourism. Given the increasing role of smart devices and online-based information in holiday selection and planning, the main objective of the paper is to evaluate the online presence, informational content and effectiveness of Romanian wineries’ websites for the promotion of wine tourism. This evaluation comprised 53 features tested in previous research and organized into four categories: main website characteristics, wine tourism, marketing, and education. Based on content analysis conducted on 154 websites of wineries identified in all Romanian regions, scores were computed and, subsequently, wineries were classified, mapped, and evaluated. The findings show that certain basic features are overall available, while exclusive features that could positively influence tourist preferences and experiences are insufficient in terms of design, education, and marketing characteristics. Less than 50% of the analysed websites inform about wine tasting activities, less than 35% specify visiting hours, and less than 20% mention tourist amenities. The websites that indicate other local wineries, allied industries or tourist attractions represent exceptions. This study underlines the importance of leveraging digital tools within the marketing strategy of wineries and the need to enhance networking among regional stakeholders as prerequisite for sustainable development. Full article
(This article belongs to the Special Issue Sustainable Consumption and Tourism Market Management)
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<p>Extension and main characteristics of Romanian vineyards at (<b>a</b>) world, (<b>b</b>) European, and (<b>c</b>) national level. Source: Authors’ elaboration, by processing data from geo-spatial.org; naturalearthdata.com; OM 1205/2018; CLC2018; NIS, 2024 [<a href="#B76-sustainability-16-06336" class="html-bibr">76</a>,<a href="#B77-sustainability-16-06336" class="html-bibr">77</a>,<a href="#B78-sustainability-16-06336" class="html-bibr">78</a>,<a href="#B79-sustainability-16-06336" class="html-bibr">79</a>].</p>
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<p>Wineries classified according to the website final score. Source: Authors’ elaboration.</p>
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<p>General characteristics score of Romanian wineries. Source: Authors’ elaboration.</p>
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<p>Wine tourism score. Source: Authors’ elaboration.</p>
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<p>Marketing function score. Source: Authors’ elaboration.</p>
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<p>Educational function score. Source: Authors’ elaboration.</p>
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31 pages, 22578 KiB  
Review
A Review of an Investigation of the Ultrafast Laser Processing of Brittle and Hard Materials
by Jiecai Feng, Junzhe Wang, Hongfei Liu, Yanning Sun, Xuewen Fu, Shaozheng Ji, Yang Liao and Yingzhong Tian
Materials 2024, 17(15), 3657; https://doi.org/10.3390/ma17153657 - 24 Jul 2024
Viewed by 53
Abstract
Ultrafast laser technology has moved from ultrafast to ultra-strong due to the development of chirped pulse amplification technology. Ultrafast laser technology, such as femtosecond lasers and picosecond lasers, has quickly become a flexible tool for processing brittle and hard materials and complex micro-components, [...] Read more.
Ultrafast laser technology has moved from ultrafast to ultra-strong due to the development of chirped pulse amplification technology. Ultrafast laser technology, such as femtosecond lasers and picosecond lasers, has quickly become a flexible tool for processing brittle and hard materials and complex micro-components, which are widely used in and developed for medical, aerospace, semiconductor applications and so on. However, the mechanisms of the interaction between an ultrafast laser and brittle and hard materials are still unclear. Meanwhile, the ultrafast laser processing of these materials is still a challenge. Additionally, highly efficient and high-precision manufacturing using ultrafast lasers needs to be developed. This review is focused on the common challenges and current status of the ultrafast laser processing of brittle and hard materials, such as nickel-based superalloys, thermal barrier ceramics, diamond, silicon dioxide, and silicon carbide composites. Firstly, different materials are distinguished according to their bandgap width, thermal conductivity and other characteristics in order to reveal the absorption mechanism of the laser energy during the ultrafast laser processing of brittle and hard materials. Secondly, the mechanism of laser energy transfer and transformation is investigated by analyzing the interaction between the photons and the electrons and ions in laser-induced plasma, as well as the interaction with the continuum of the materials. Thirdly, the relationship between key parameters and ultrafast laser processing quality is discussed. Finally, the methods for achieving highly efficient and high-precision manufacturing of complex three-dimensional micro-components are explored in detail. Full article
(This article belongs to the Special Issue Precision Manufacturing of Advanced Alloys and Composites)
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Figure 1

Figure 1
<p>Nonlinear photoionization of femtosecond laser processing: (<b>a</b>) multiphoton ionization, (<b>b</b>) tunneling ionization, and (<b>c</b>) avalanche ionization [<a href="#B43-materials-17-03657" class="html-bibr">43</a>].</p>
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<p>Scheme of the ultrafast quasi-3D imaging method: (<b>a</b>) top view, (<b>b</b>) side view, in (<b>c</b>), ablation and eruption dynamics of a sapphire, (<b>d</b>) recognition, (<b>e</b>) extraction, (<b>f</b>) rotation, and (<b>g</b>) intersection [<a href="#B85-materials-17-03657" class="html-bibr">85</a>].</p>
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<p>Femtosecond laser processing system: (<b>a</b>) schematic diagram, (<b>b</b>) parameter changes during micro-hole drilling, (<b>c</b>) single-pulse and (<b>d</b>) double-pulse bursts [<a href="#B90-materials-17-03657" class="html-bibr">90</a>].</p>
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<p>Schematic diagram of electron excitation process in the ultrafast laser process [<a href="#B91-materials-17-03657" class="html-bibr">91</a>].</p>
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<p>Time scale of the various secondary processes [<a href="#B79-materials-17-03657" class="html-bibr">79</a>].</p>
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<p>(<b>a</b>) Electron and lattice temperature evolution, (<b>b</b>) melted zone, (<b>c</b>) thermalization time, (<b>d</b>) electron–phonon coupling factor, (<b>e</b>) final lattice temperature, and (<b>f</b>) ablation area at different pulse separations [<a href="#B101-materials-17-03657" class="html-bibr">101</a>].</p>
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<p>Schematic diagram of (<b>a</b>) negative focus position, (<b>b</b>) zero focus position, and (<b>c</b>) positive focus position [<a href="#B118-materials-17-03657" class="html-bibr">118</a>].</p>
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<p>(<b>a</b>) Schematic diagram of femtosecond drilling system: (<b>b</b>) optical transmission principle of spiral scanning module, (<b>c</b>) scanning path, and (<b>d</b>) mechanism of two-step spiral drilling [<a href="#B120-materials-17-03657" class="html-bibr">120</a>].</p>
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<p>Materials and schemes diagram of femtosecond laser processing: (<b>a</b>) SEM photograph of diamond; (<b>b</b>) three-dimensional morphology of the diamond; (<b>c</b>) femtosecond laser processing system; and (<b>d</b>) three experimental schemes: change only the pulse number, N, only the single pulse laser energy, E, and simultaneously change N and E [<a href="#B138-materials-17-03657" class="html-bibr">138</a>].</p>
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<p>Schematic diagram of (<b>a</b>) long pulsed laser, (<b>b</b>) ultrashort-pulsed laser, (<b>c</b>) femtosecond laser processing system, (<b>d</b>) photograph of the system, and (<b>e</b>) resonance microstructure [<a href="#B154-materials-17-03657" class="html-bibr">154</a>].</p>
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<p>(<b>a</b>) Experimental setup used to generate the multi-wavelength ultrashort annular beams using double femtosecond Bessel laser beams; beam cross-sectional images after the silica glass when single (<b>b</b>) and double (<b>c</b>) femtosecond Bessel laser beam(s) were used, respectively. The single pulse energies used in (<b>b</b>,<b>c</b>) are 0.4 mJ and 0.2 mJ, respectively. (<b>d</b>) Schematic diagram of a potential application of multidimensional multiplexing optical communication system [<a href="#B155-materials-17-03657" class="html-bibr">155</a>].</p>
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<p>Two-layer model and simulation results: (<b>a</b>) schematic diagram of the two contributions, (<b>b</b>) two-layer model consists of two linear retarders; (<b>c</b>,<b>d</b>) the evolution of laser radiation is simulated based on laser polarization and compared with experimental results; (<b>e</b>) calculations and measurements results [<a href="#B157-materials-17-03657" class="html-bibr">157</a>].</p>
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<p>Surface morphology and water contact angle of superhydrophobic glass obtained using the optimal parameters: (<b>a</b>) laser scanning confocal microscope, (<b>b</b>) microstructure and sliding angle, (<b>c</b>) water contact angle, and (<b>d</b>) atomic force microscopy [<a href="#B160-materials-17-03657" class="html-bibr">160</a>].</p>
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<p>The microstructure of silica with different laser pulse energies: (<b>a</b>) 1 mJ, (<b>b</b>) 2 mJ, (<b>c</b>) 3 mJ, (<b>d</b>) 4 mJ, (<b>e</b>) 5 mJ, and (<b>f</b>) 5.8 mJ [<a href="#B172-materials-17-03657" class="html-bibr">172</a>].</p>
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<p>Experimental setup of the femtosecond laser drilling system [<a href="#B173-materials-17-03657" class="html-bibr">173</a>].</p>
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<p>(<b>a</b>) The ultrashort-pulse direct laser interferogram experimental system, (<b>b</b>) the schematic of the process, (<b>c</b>) microstructure produced by two laser beams without interference, and (<b>d</b>) microstructure produced using two-beam direct laser interferogram [<a href="#B174-materials-17-03657" class="html-bibr">174</a>].</p>
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<p>The morphology with different parameters: (<b>a1</b>,<b>a2</b>) low energy (<b>b1</b>,<b>b2</b>) middle energy, (<b>c1</b>,<b>c2</b>) high energy, and (<b>d</b>) removal mechanism [<a href="#B175-materials-17-03657" class="html-bibr">175</a>].</p>
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<p>Schematic diagram of the ablation mechanism: (<b>a</b>) Si matrix zone and (<b>b</b>) SiC<sub>L</sub> grain zone [<a href="#B176-materials-17-03657" class="html-bibr">176</a>].</p>
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<p>Schematic diagram of (<b>a</b>) femtosecond laser processing system, (<b>b</b>) laser scanning paths, and (<b>c</b>) calculation of overlap rate [<a href="#B179-materials-17-03657" class="html-bibr">179</a>].</p>
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<p>(<b>a</b>) A femtosecond helical drilling system, (<b>b</b>) machining area, (<b>c</b>) helical scanning trajectory, and (<b>d</b>) microstructure profiles of hole walls produced with different drilling intervals [<a href="#B191-materials-17-03657" class="html-bibr">191</a>].</p>
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<p>(<b>a</b>) Picture and (<b>b</b>) schematic of the laser workstation [<a href="#B192-materials-17-03657" class="html-bibr">192</a>].</p>
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<p>Diagram of (<b>a</b>) femtosecond five-axis micromachining system, (<b>b</b>) variable angle, and (<b>c</b>) laser energy measurement [<a href="#B194-materials-17-03657" class="html-bibr">194</a>].</p>
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<p>The ablation crater microstructure with various laser incident angles: (<b>a</b>) 0°, (<b>b</b>) 10°, (<b>c</b>) 20°, (<b>d</b>) 30°, (<b>e</b>) 40°, (<b>f</b>) 50°, (<b>g</b>) 60°, and (<b>h</b>) 70° [<a href="#B194-materials-17-03657" class="html-bibr">194</a>].</p>
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<p>Schematic diagram of (<b>a</b>) real-time closed-loop feedback in femtosecond laser micromachining, (<b>b</b>) detecting the transformation of the laser beam, and (<b>c</b>) forecasting the remaining number of pulses [<a href="#B198-materials-17-03657" class="html-bibr">198</a>].</p>
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<p>Schematic diagram: (<b>a</b>) femtosecond laser drilling system with monitoring platform, (<b>b</b>) photodiode and material positions, (<b>c</b>) femtosecond laser percussion drilling, and (<b>d</b>) real monitoring process [<a href="#B74-materials-17-03657" class="html-bibr">74</a>].</p>
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<p>Schematic diagram of (<b>a</b>) femtosecond laser percussion micromachining system and (<b>b</b>) four-stage percussion laser drilling process [<a href="#B199-materials-17-03657" class="html-bibr">199</a>].</p>
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<p>Schematic diagram of femtosecond laser processing and deep learning: (<b>a</b>) femtosecond laser micromachining, (<b>b</b>) encoding process of microstructure types with different parameters, (<b>c</b>) deep learning flow diagram, and (<b>d</b>) typical microstructure [<a href="#B200-materials-17-03657" class="html-bibr">200</a>].</p>
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10 pages, 747 KiB  
Article
Forecasting Copper Prices Using Deep Learning: Implications for Energy Sector Economies
by Reza Derakhshani, Amin GhasemiNejad, Naeeme Amani Zarin, Mohammad Mahdi Amani Zarin and Mahdis sadat Jalaee
Mathematics 2024, 12(15), 2316; https://doi.org/10.3390/math12152316 - 24 Jul 2024
Viewed by 51
Abstract
Energy is a foundational element of the modern industrial economy. Prices of metals play a crucial role in energy sectors’ revenue evaluations, making them the cornerstone of effective payment management employed by resource policymakers. Copper is one of the most important industrial metals, [...] Read more.
Energy is a foundational element of the modern industrial economy. Prices of metals play a crucial role in energy sectors’ revenue evaluations, making them the cornerstone of effective payment management employed by resource policymakers. Copper is one of the most important industrial metals, and plays a vital role in various aspects of today’s economies. Copper is strongly associated with many industries, such as electrical wiring, construction, and equipment manufacturing; therefore, the price of copper has become a significant impact factor on the performance of related energy companies and economies. The accurate prediction of copper prices holds particular significance for market participants and policymakers. This study carried out research to address the gap in copper price forecasting using a one-dimensional convolutional neural network (1D-CNN). The proposed method was implemented and tested using extensive data spanning from November 1991 to May 2023. To assess the performance of the CNN model, standard evaluation metrics, such as the R-value, mean squared error (MSE), root mean squared error (RMSE), and mean absolute error (MAE), were employed. For the prediction of global copper prices, the proposed artificial intelligence algorithm demonstrated high accuracy. Lastly, future global copper prices were predicted up to 2027 by the CNN and compared with forecasts published by the International Monetary Fund and the International Society of Automation. The results show the exceptional performance of the CNN, establishing it as a reliable tool for monitoring copper prices and predicting global copper price volatilities near reality, and as carrying significant implications for policymakers and governments in shaping energy policies and ensuring equitable implementation of energy strategies. Full article
30 pages, 1702 KiB  
Review
Receptors and Signaling Pathways Controlling Beta-Cell Function and Survival as Targets for Anti-Diabetic Therapeutic Strategies
by Stéphane Dalle and Amar Abderrahmani
Cells 2024, 13(15), 1244; https://doi.org/10.3390/cells13151244 - 24 Jul 2024
Viewed by 45
Abstract
Preserving the function and survival of pancreatic beta-cells, in order to achieve long-term glycemic control and prevent complications, is an essential feature for an innovative drug to have clinical value in the treatment of diabetes. Innovative research is developing therapeutic strategies to prevent [...] Read more.
Preserving the function and survival of pancreatic beta-cells, in order to achieve long-term glycemic control and prevent complications, is an essential feature for an innovative drug to have clinical value in the treatment of diabetes. Innovative research is developing therapeutic strategies to prevent pathogenic mechanisms and protect beta-cells from the deleterious effects of inflammation and/or chronic hyperglycemia over time. A better understanding of receptors and signaling pathways, and of how they interact with each other in beta-cells, remains crucial and is a prerequisite for any strategy to develop therapeutic tools aimed at modulating beta-cell function and/or mass. Here, we present a comprehensive review of our knowledge on membrane and intracellular receptors and signaling pathways as targets of interest to protect beta-cells from dysfunction and apoptotic death, which opens or could open the way to the development of innovative therapies for diabetes. Full article
(This article belongs to the Section Cellular Metabolism)
21 pages, 16757 KiB  
Article
Flow-Field Inference for Turbulent Exhale Flow Measurement
by Shane Transue, Do-kyeong Lee, Jae-Sung Choi, Seongjun Choi, Min Hong and Min-Hyung Choi
Diagnostics 2024, 14(15), 1596; https://doi.org/10.3390/diagnostics14151596 - 24 Jul 2024
Viewed by 74
Abstract
Background: Vision-based pulmonary diagnostics present a unique approach for tracking and measuring natural breathing behaviors through remote imaging. While many existing methods correlate chest and diaphragm movements to respiratory behavior, we look at how the direct visualization of thermal CO2 exhale flow [...] Read more.
Background: Vision-based pulmonary diagnostics present a unique approach for tracking and measuring natural breathing behaviors through remote imaging. While many existing methods correlate chest and diaphragm movements to respiratory behavior, we look at how the direct visualization of thermal CO2 exhale flow patterns can be tracked to directly measure expiratory flow. Methods: In this work, we present a novel method for isolating and extracting turbulent exhale flow signals from thermal image sequences through flow-field prediction and optical flow measurement. The objective of this work is to introduce a respiratory diagnostic tool that can be used to capture and quantify natural breathing, to identify and measure respiratory metrics such as breathing rate, flow, and volume. One of the primary contributions of this work is a method for capturing and measuring natural exhale behaviors that describe individualized pulmonary traits. By monitoring subtle individualized respiratory traits, we can perform secondary analysis to identify unique personalized signatures and abnormalities to gain insight into pulmonary function. In our study, we perform data acquisition within a clinical setting to train an inference model (FieldNet) that predicts flow-fields to quantify observed exhale behaviors over time. Results: Expiratory flow measurements capturing individualized flow signatures from our initial cohort demonstrate how the proposed flow field model can be used to isolate and analyze turbulent exhale behaviors and measure anomalous behavior. Conclusions: Our results illustrate that detailed spatial flow analysis can contribute to unique signatures for identifying patient specific natural breathing behaviors and abnormality detection. This provides the first-step towards a non-contact respiratory technology that directly captures effort-independent behaviors based on the direct measurement of imaged CO2 exhaled airflow patterns. Full article
(This article belongs to the Special Issue Diagnosis, Classification, and Monitoring of Pulmonary Diseases)
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Figure 1
<p>Flow sequences from three selected subjects illustrating unique exhale patterns. Each sequence presents static states of the captured infrared thermal CO<sub>2</sub> flow for a single exhale episode for each of the selected subjects. Each sequence presents five (<math display="inline"><semantics> <mrow> <mi>h</mi> <mo>=</mo> <mn>512</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>w</mi> <mo>=</mo> <mn>640</mn> </mrow> </semantics></math>) frames for each subject that exemplify the flow of each patient’s exhale pattern.</p>
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<p>Approach overview. Facial tracking within thermal sequences capturing exhale behaviors is used to localize the ROI for which 2D flow fields are generated. These fields are then encoded and used to train the proposed <span class="html-italic">FieldNet</span> architecture for predicting flow fields. These fields and then used to generate signals representing captured exhale behaviors.</p>
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<p>Tracking region for select frames 1–8. Optical flow is utilized to identify the correspondence and movement between subsequent frames of the tracked region. This fixed window is tracked throughout all frames of the sequence. The flow vectors are displayed using the real-time approximation (stride = 2 + line segment rendering) for images of size (<math display="inline"><semantics> <mrow> <mi>h</mi> <mo>=</mo> <mn>512</mn> </mrow> </semantics></math>, <math display="inline"><semantics> <mrow> <mi>w</mi> <mo>=</mo> <mn>640</mn> </mrow> </semantics></math>).</p>
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<p>Tracked flow sequence for select frames 1–8. The tracked sub-region of the exhale is recorded for both training and inference datasets. Flow vector magnitude and direction is displayed using line segments (stride = 2) for the tracked sub-region. Color indicates flow vector magnitude.</p>
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<p>Illustration of the flow sequence vector fields for one exhale sequence. The sequence is illustrated by the flow fields for <math display="inline"><semantics> <mrow> <mi>i</mi> <mo>%</mo> <mi>n</mi> </mrow> </semantics></math> frames where <math display="inline"><semantics> <mrow> <mi>n</mi> <mo>=</mo> <mn>3</mn> </mrow> </semantics></math>. The flow is characterized by the initial release and dissipation of the exhale, illustrated as a function of magnitude.</p>
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<p>Encoding equivalency. Angular encoding (1) is equivalent to direct normalization on the bounds <math display="inline"><semantics> <mrow> <mo>[</mo> <mn>0</mn> <mo>,</mo> <mn>1</mn> <mo>]</mo> </mrow> </semantics></math> when magnitude is included. Therefore the optimal encoding is the direct parallel normalization of the vector field by component. Note: Angle (<math display="inline"><semantics> <msub> <mi>y</mi> <mn>1</mn> </msub> </semantics></math> slice) is equivalent to Normalized (<span class="html-italic">y</span> slice) and Angle (<math display="inline"><semantics> <msub> <mi>y</mi> <mn>2</mn> </msub> </semantics></math> slice) is equivalent to Normalized (<span class="html-italic">x</span> slice).</p>
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<p>Flow field encoding visualization. The flow field (left) containing <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>h</mi> <mo>·</mo> <mi>w</mi> <mo>)</mo> </mrow> </semantics></math> vector pairs is encoded into the <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>h</mi> <mo>,</mo> <mi>w</mi> <mo>,</mo> <mn>2</mn> <mo>)</mo> </mrow> </semantics></math> tensor representing the flow between subsequent frames. The masked region of the subject contains no flow as compared to the background noise floor. The normalized slices <span class="html-italic">x</span> and <span class="html-italic">y</span> are stacked and provided as input to the FieldNet model.</p>
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<p>Interleaved training dataset generation. The model input <math display="inline"><semantics> <msub> <mi>x</mi> <mrow> <mi>t</mi> <mi>r</mi> <mi>a</mi> <mi>i</mi> <mi>n</mi> </mrow> </msub> </semantics></math> is composed of two encoded flow frames from times <math display="inline"><semantics> <msub> <mi>t</mi> <mi>i</mi> </msub> </semantics></math> and <math display="inline"><semantics> <msub> <mi>t</mi> <mrow> <mi>i</mi> <mo>+</mo> <mn>2</mn> </mrow> </msub> </semantics></math>, forming the input tensor of shape <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>h</mi> <mo>,</mo> <mi>w</mi> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math>. The <math display="inline"><semantics> <msub> <mi>y</mi> <mrow> <mi>t</mi> <mi>r</mi> <mi>a</mi> <mi>i</mi> <mi>n</mi> </mrow> </msub> </semantics></math> expected value is defined as the intermediate frame at time <math display="inline"><semantics> <msub> <mi>t</mi> <mrow> <mi>i</mi> <mo>+</mo> <mn>1</mn> </mrow> </msub> </semantics></math> with shape <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>h</mi> <mo>,</mo> <mi>w</mi> <mo>,</mo> <mn>2</mn> <mo>)</mo> </mrow> </semantics></math>.</p>
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<p>Model Architecture. The model is responsible for predicting the intermediate flow state of two flow fields stacked as an input tensor of shape (<math display="inline"><semantics> <mrow> <mi>h</mi> <mo>,</mo> <mi>w</mi> <mo>,</mo> <mn>4</mn> </mrow> </semantics></math>). This is achieved by defining a UNET [<a href="#B23-diagnostics-14-01596" class="html-bibr">23</a>] inspired architecture that takes two encoded flow fields and predicts the encoded output flow field. Skip connections are utilized to preserve the spatial distribution of the flow throughout the network. The output defines a single intermediate flow field of shape (<math display="inline"><semantics> <mrow> <mi>h</mi> <mo>,</mo> <mi>w</mi> <mo>,</mo> <mn>2</mn> </mrow> </semantics></math>).</p>
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<p>Flow field interpolation. Given the current and next frames at times (<span class="html-italic">t</span>, <math display="inline"><semantics> <mrow> <mi>t</mi> <mo>+</mo> <mn>2</mn> </mrow> </semantics></math>), the predicted frame is compared to the ground truth, both of which represent the intermediate flow at time (<math display="inline"><semantics> <mrow> <mi>t</mi> <mo>+</mo> <mn>1</mn> </mrow> </semantics></math>).</p>
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<p>Optical flow (raw) versus model predicted flow field signal. FieldNet predicted flow fields contain a high signal-to-noise ratio that provides an implicit filtering of flow fields. The direct optical flow result (<b>top</b>) is compared with the model generated flow result (<b>bottom</b>).</p>
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<p>Exhale sequence peak detection and exhale segment extraction. Each recorded sequence is subdivided into individual exhales based on the minimal of each exhale. These are then consolidated into exhale segments (uniquely colored) used to train the filtering and anomaly detection models.</p>
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<p>Segment filtering model. An autoencoder is employed as a noise reduction method to eliminate the high variance within each exhale segment caused by turbulent flow field magnitudes.</p>
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<p>Anomaly model. Exhale instances are used to generate anomaly error waveforms by computing the absolute difference between the instance and the provided reference. This anomaly waveform is then used as the expected training value for the output of the network.</p>
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<p>Multi-subject flow field interpolation. The interpolated result for arbitrary selected frames containing exhale flows are illustrated for three subjects. The ground truth field <math display="inline"><semantics> <msub> <mover accent="true"> <mi>F</mi> <mo>→</mo> </mover> <mrow> <mi>t</mi> <mo>+</mo> <mn>1</mn> </mrow> </msub> </semantics></math> is provided by the computed optical flow and compared to the predicted field <math display="inline"><semantics> <msub> <mover accent="true"> <mi>F</mi> <mo>→</mo> </mover> <mrow> <mi>t</mi> <mo>+</mo> <mn>1</mn> </mrow> </msub> </semantics></math>. Color represents flow magnitude.</p>
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<p>Select subject sequences (1–10). Each plot represents a collection of 500 flow frames that are used to generate expiatory waveforms. Each provides a unique subject exhale behaviors.</p>
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<p>Anomaly results for select exhale segments. The input waveform is illustrated with the anomaly scale color mapped by magnitude. The regions of the waveform that illustrate anomalous behaviors result in higher predicted variance from the reference model.</p>
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13 pages, 876 KiB  
Article
Preimplantation Genetic Testing of Spinocerebellar Ataxia Type 3/Machado–Joseph Disease—Robust Tools for Direct and Indirect Detection of the ATXN3 (CAG)n Repeat Expansion
by Mulias Lian, Vivienne J. Tan, Riho Taguchi, Mingjue Zhao, Gui-Ping Phang, Arnold S. Tan, Shuling Liu, Caroline G. Lee and Samuel S. Chong
Int. J. Mol. Sci. 2024, 25(15), 8073; https://doi.org/10.3390/ijms25158073 - 24 Jul 2024
Viewed by 70
Abstract
Spinocerebellar ataxia type 3/Machado–Joseph disease (SCA3/MJD) is a neurodegenerative disorder caused by the ATXN3 CAG repeat expansion. Preimplantation genetic testing for monogenic disorders (PGT-M) of SCA3/MJD should include reliable repeat expansion detection coupled with high-risk allele determination using informative linked markers. One couple [...] Read more.
Spinocerebellar ataxia type 3/Machado–Joseph disease (SCA3/MJD) is a neurodegenerative disorder caused by the ATXN3 CAG repeat expansion. Preimplantation genetic testing for monogenic disorders (PGT-M) of SCA3/MJD should include reliable repeat expansion detection coupled with high-risk allele determination using informative linked markers. One couple underwent SCA3/MJD PGT-M combining ATXN3 (CAG)n triplet-primed PCR (TP-PCR) with customized linkage-based risk allele genotyping on whole-genome-amplified trophectoderm cells. Microsatellites closely linked to ATXN3 were identified and 16 markers were genotyped on 187 anonymous DNAs to verify their polymorphic information content. In the SCA3/MJD PGT-M case, the ATXN3 (CAG)n TP-PCR and linked marker analysis results concurred completely. Among the three unaffected embryos, a single embryo was transferred and successfully resulted in an unaffected live birth. A total of 139 microsatellites within 1 Mb upstream and downstream of the ATXN3 CAG repeat were identified and 8 polymorphic markers from each side were successfully co-amplified in a single-tube reaction. A PGT-M assay involving ATXN3 (CAG)n TP-PCR and linkage-based risk allele identification has been developed for SCA3/MJD. A hexadecaplex panel of highly polymorphic microsatellites tightly linked to ATXN3 has been developed for the rapid identification of informative markers in at-risk couples for use in the PGT-M of SCA3/MJD. Full article
20 pages, 3246 KiB  
Article
Wide-Scale Identification of Small Woody Features of Landscape from Remote Sensing
by Alessio Patriarca, Eros Caputi, Lorenzo Gatti, Ernesto Marcheggiani, Fabio Recanatesi, Carlo Maria Rossi and Maria Nicolina Ripa
Land 2024, 13(8), 1128; https://doi.org/10.3390/land13081128 - 24 Jul 2024
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Abstract
Small landscape features (i.e., trees outside forest, small woody features) and linear vegetation such as hedgerows, riparian vegetation, and green lanes are vital ecological structures in agroecosystems, enhancing the biodiversity, landscape diversity, and protecting water bodies. Therefore, their monitoring is fundamental to assessing [...] Read more.
Small landscape features (i.e., trees outside forest, small woody features) and linear vegetation such as hedgerows, riparian vegetation, and green lanes are vital ecological structures in agroecosystems, enhancing the biodiversity, landscape diversity, and protecting water bodies. Therefore, their monitoring is fundamental to assessing a specific territory’s arrangement and verifying the effectiveness of strategies and financial measures activated at the local or European scale. The size of these elements and territorial distribution make their identification extremely complex without specific survey campaigns; in particular, remote monitoring requires data of considerable resolution and, therefore, is very costly. This paper proposes a methodology to map these features using a combination of open-source or low-cost high-resolution orthophotos (RGB), which are typically available to local administrators and are object-oriented classification methods. Additionally, multispectral satellite images from the Sentinel-2 platform were utilized to further characterize the identified elements. The produced map, compared with the other existing layers, provided better results than other maps at the European scale. Therefore, the developed method is highly effective for the remote and wide-scale assessment of SWFs, making it a crucial tool for defining and monitoring development policies in rural environments. Full article
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