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Search Results (178)

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26 pages, 7621 KiB  
Article
A Parallel Multi-Party Privacy-Preserving Record Linkage Method Based on a Consortium Blockchain
by Shumin Han, Zikang Wang, Dengrong Shen and Chuang Wang
Mathematics 2024, 12(12), 1854; https://doi.org/10.3390/math12121854 - 14 Jun 2024
Viewed by 401
Abstract
Privacy-preserving record linkage (PPRL) is the process of linking records from various data sources, ensuring that matching records for the same entity are shared among parties while not disclosing other sensitive data. However, most existing PPRL approaches currently rely on third parties for [...] Read more.
Privacy-preserving record linkage (PPRL) is the process of linking records from various data sources, ensuring that matching records for the same entity are shared among parties while not disclosing other sensitive data. However, most existing PPRL approaches currently rely on third parties for linking, posing risks of malicious tampering and privacy breaches, making it difficult to ensure the security of the linkage. Therefore, we propose a parallel multi-party PPRL method based on consortium blockchain technology which can effectively address the issue of semi-trusted third-party validation, auditing all parties involved in the PPRL process for potential malicious tampering or attacks. To improve the efficiency and security of consensus within a consortium blockchain, we propose a practical Byzantine fault tolerance consensus algorithm based on matching efficiency. Additionally, we have incorporated homomorphic encryption into Bloom filter encoding to enhance its security. To optimize computational efficiency, we have adopted the MapReduce model for parallel encryption and utilized a binary storage tree as the data structure for similarity computation. The experimental results show that our method can effectively ensure data security while also exhibiting relatively high linkage quality and scalability. Full article
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<p>The similarity and error between the BF and SBF.</p>
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<p>The overall process of multi-party PPRL.</p>
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<p>The process of the data preparation and generation module.</p>
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<p>The process of the approximate matching module.</p>
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<p>The structure of the binary storage tree.</p>
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<p>Runtime with different values for dataset sizes.</p>
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<p>Throughput with different values for the number of nodes.</p>
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<p>Consensus delay with different values for the number of nodes.</p>
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<p>The variation in recall with the number of participants in the three disturbed datasets.</p>
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<p>The variation in precision with the number of participants in the three disturbed datasets.</p>
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<p>The variation in the F-measure with the number of participants in the three disturbed datasets.</p>
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<p>The distribution of F-measure values with different disturbance levels of datasets and different numbers of participants.</p>
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<p>The F-measure distribution of the ABEL method and our proposed method.</p>
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20 pages, 5253 KiB  
Article
A Multi-Party Privacy-Preserving Record Linkage Method Based on Secondary Encoding
by Shumin Han, Yizi Wang, Derong Shen and Chuang Wang
Mathematics 2024, 12(12), 1800; https://doi.org/10.3390/math12121800 - 9 Jun 2024
Viewed by 648
Abstract
With the advent of the big data era, data security and sharing have become the core elements of new-era data processing. Privacy-preserving record linkage (PPRL), as a method capable of accurately and securely matching and sharing the same entity across multiple data sources, [...] Read more.
With the advent of the big data era, data security and sharing have become the core elements of new-era data processing. Privacy-preserving record linkage (PPRL), as a method capable of accurately and securely matching and sharing the same entity across multiple data sources, is receiving increasing attention. Among the existing research methods, although PPRL methods based on Bloom Filter encoding excel in computational efficiency, they are susceptible to privacy attacks, and the security risks they face cannot be ignored. To balance the contradiction between security and computational efficiency, we propose a multi-party PPRL method based on secondary encoding. This method, based on Bloom Filter encoding, generates secondary encoding according to well-designed encoding rules and utilizes the proposed linking rules for secure matching. Owing to its excellent encoding and linking rules, this method successfully addresses the balance between security and computational efficiency. The experimental results clearly show that, in comparison to the original Bloom Filter encoding, this method has nearly equivalent computational efficiency and linkage quality. The proposed rules can effectively prevent the re-identification problem in Bloom Filter encoding (proven). Compared to existing privacy-preserving record linkage methods, this method shows higher security, making it more suitable for various practical application scenarios. The introduction of this method is of great significance for promoting the widespread application of privacy-preserving record linkage technology. Full article
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<p>Flowchart of multi-party PPRL method based on secondary encoding.</p>
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<p>An example of the multi-party PPRL method based on secondary encoding.</p>
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<p>Approximate record linkage process.</p>
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<p>Approximate matching process.</p>
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<p>An example of approximate matching.</p>
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<p>Runtime with the size of the data source.</p>
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<p>Runtime with the number of parties.</p>
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<p>Runtime with the number of the error limit.</p>
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<p>Recall with the number of parties.</p>
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<p>Precision with the number of parties.</p>
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<p>F-measure with the number of parties.</p>
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<p>Precision–recall curve with 7 parties.</p>
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<p>Recall with the error limit.</p>
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<p>Precision with the error limit.</p>
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<p>F-measure with the error limit.</p>
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<p>Precision–recall curve with 3 as the error limit.</p>
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<p>Leakage level with the number of parties.</p>
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19 pages, 2537 KiB  
Article
Use of Real-World FHIR Data Combined with Context-Sensitive Decision Modeling to Guide Sentinel Biopsy in Melanoma
by Catharina Lena Beckmann, Georg Lodde, Jessica Swoboda, Elisabeth Livingstone and Britta Böckmann
J. Clin. Med. 2024, 13(11), 3353; https://doi.org/10.3390/jcm13113353 - 6 Jun 2024
Viewed by 528
Abstract
Background: To support clinical decision-making at the point of care, the “best next step” based on Standard Operating Procedures (SOPs) and actual accurate patient data must be provided. To do this, textual SOPs have to be transformed into operable clinical algorithms and [...] Read more.
Background: To support clinical decision-making at the point of care, the “best next step” based on Standard Operating Procedures (SOPs) and actual accurate patient data must be provided. To do this, textual SOPs have to be transformed into operable clinical algorithms and linked to the data of the patient being treated. For this linkage, we need to know exactly which data are needed by clinicians at a certain decision point and whether these data are available. These data might be identical to the data used within the SOP or might integrate a broader view. To address these concerns, we examined if the data used by the SOP is also complete from the point of view of physicians for contextual decision-making. Methods: We selected a cohort of 67 patients with stage III melanoma who had undergone adjuvant treatment and mainly had an indication for a sentinel biopsy. First, we performed a step-by-step simulation of the patient treatment along our clinical algorithm, which is based on a hospital-specific SOP, to validate the algorithm with the given Fast Healthcare Interoperability Resources (FHIR)-based data of our cohort. Second, we presented three different decision situations within our algorithm to 10 dermatooncologists, focusing on the concrete patient data used at this decision point. The results were conducted, analyzed, and compared with those of the pure algorithmic simulation. Results: The treatment paths of patients with melanoma could be retrospectively simulated along the clinical algorithm using data from the patients’ electronic health records. The subsequent evaluation by dermatooncologists showed that the data used at the three decision points had a completeness between 84.6% and 100.0% compared with the data used by the SOP. At one decision point, data on “patient age (at primary diagnosis)” and “date of first diagnosis” were missing. Conclusions: The data needed for our decision points are available in the FHIR-based dataset. Furthermore, the data used at decision points by the SOP and hence the clinical algorithm are nearly complete compared with the data required by physicians in clinical practice. This is an important precondition for further research focusing on presenting decision points within a treatment process integrated with the patient data needed. Full article
(This article belongs to the Section Dermatology)
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<p>The entire research process, starting with the initial situation, simulation of the real-world EHR data along the clinical algorithm, and evaluation of data completeness at a specific decision point (green). EHR = electronic health records, SOP = standard operating procedure.</p>
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<p>Patient flow chart. ICI = immune checkpoint inhibition; TT = targeted therapy; MUP = melanoma of unknown primary; SLNE = sentinel lymph node excision; SOP = standard operating procedure.</p>
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<p>Graphical representation of the pre-processing procedure used for simulation.</p>
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<p>Component diagram of the technical set-up for simulation.</p>
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<p>A snippet (translated into English) of the clinical algorithm [<a href="#B20-jcm-13-03353" class="html-bibr">20</a>,<a href="#B21-jcm-13-03353" class="html-bibr">21</a>] that was presented to physicians to evaluate data needs at the decision point (highlighted in green), here exemplified by decision point DP8 (see <a href="#jcm-13-03353-t002" class="html-table">Table 2</a>).</p>
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<p>Abstract flowchart of the treatment of melanoma stage III-patients according to the SOP document (from DP1 onwards, a distinction is made among patients with an indication for a sentinel biopsy, MUP patients, and patients who only receive guideline-based follow-up care). The sequence of decision points (green, listed in <a href="#jcm-13-03353-t002" class="html-table">Table 2</a>) and the proportionate number of the 67 adjuvantly treated patients from our initial cohort who passed through the individual treatment sections during retrospective simulation (blue) are shown. * 12 patients left the SLNE section because of highly individualized treatment in terms of modeling the clinical algorithm, and one patient left because there was no risk constellation to receive an SLNE. DP = decision point, MUP = melanoma of unknown primary, SLNE = sentinel lymph node excision, SOP = standard operating procedure.</p>
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16 pages, 707 KiB  
Article
Patient Perspectives on Portal-Based Anxiety and Depression Screening in HIV Care: A Qualitative Study Using the Consolidated Framework for Implementation Research
by Jacob A. Walker, Erin M. Staab, Jessica P. Ridgway, Jessica Schmitt, Melissa I. Franco, Scott Hunter, Darnell Motley and Neda Laiteerapong
Int. J. Environ. Res. Public Health 2024, 21(6), 692; https://doi.org/10.3390/ijerph21060692 - 28 May 2024
Viewed by 651
Abstract
Electronic patient portals represent a promising means of integrating mental health assessments into HIV care where anxiety and depression are highly prevalent. Patient attitudes toward portal-based mental health screening within HIV clinics have not been well described. The aim of this formative qualitative [...] Read more.
Electronic patient portals represent a promising means of integrating mental health assessments into HIV care where anxiety and depression are highly prevalent. Patient attitudes toward portal-based mental health screening within HIV clinics have not been well described. The aim of this formative qualitative study is to characterize the patient-perceived facilitators and barriers to portal-based anxiety and depression screening within HIV care in order to inform implementation strategies for mental health screening. Twelve adult HIV clinic patients participated in semi-structured interviews that were audio recorded and transcribed. The transcripts were coded using constructs from the Consolidated Framework for Implementation Research and analyzed thematically to identify the barriers to and facilitators of portal-based anxiety and depression screening. Facilitators included an absence of alternative screening methods, an approachable design, perceived adaptability, high compatibility with HIV care, the potential for linkage to treatment, an increased self-awareness of mental health conditions, the ability to bundle screening with clinic visits, and communicating an action plan for results. The barriers included difficulty navigating the patient portal system, a lack of technical support, stigmatization from the healthcare system, care team response times, and the novelty of using patient portals for communication. The patients in the HIV clinic viewed the use of a portal-based anxiety and depression screening tool as highly compatible with routine HIV care. Technical difficulties, follow-up concerns, and a fear of stigmatization were commonly perceived as barriers to portal use. The results of this study can be used to inform implementation strategies when designing or incorporating portal-based mental health screening into other HIV care settings. Full article
(This article belongs to the Section Behavioral and Mental Health)
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<p>Coding tree of identified CFIR constructs. Identified codes are color-coded by CFIR domain. The number of times the code appeared in interviews is in parentheses.</p>
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27 pages, 512 KiB  
Article
De-Anonymizing Users across Rating Datasets via Record Linkage and Quasi-Identifier Attacks
by Nicolás Torres and Patricio Olivares
Data 2024, 9(6), 75; https://doi.org/10.3390/data9060075 - 27 May 2024
Viewed by 814
Abstract
The widespread availability of pseudonymized user datasets has enabled personalized recommendation systems. However, recent studies have shown that users can be de-anonymized by exploiting the uniqueness of their data patterns, raising significant privacy concerns. This paper presents a novel approach that tackles the [...] Read more.
The widespread availability of pseudonymized user datasets has enabled personalized recommendation systems. However, recent studies have shown that users can be de-anonymized by exploiting the uniqueness of their data patterns, raising significant privacy concerns. This paper presents a novel approach that tackles the challenging task of linking user identities across multiple rating datasets from diverse domains, such as movies, books, and music, by leveraging the consistency of users’ rating patterns as high-dimensional quasi-identifiers. The proposed method combines probabilistic record linkage techniques with quasi-identifier attacks, employing the Fellegi–Sunter model to compute the likelihood of two records referring to the same user based on the similarity of their rating vectors. Through extensive experiments on three publicly available rating datasets, we demonstrate the effectiveness of the proposed approach in achieving high precision and recall in cross-dataset de-anonymization tasks, outperforming existing techniques, with F1-scores ranging from 0.72 to 0.79 for pairwise de-anonymization tasks. The novelty of this research lies in the unique integration of record linkage techniques with quasi-identifier attacks, enabling the effective exploitation of the uniqueness of rating patterns as high-dimensional quasi-identifiers to link user identities across diverse datasets, addressing a limitation of existing methodologies. We thoroughly investigate the impact of various factors, including similarity metrics, dataset combinations, data sparsity, and user demographics, on the de-anonymization performance. This work highlights the potential privacy risks associated with the release of anonymized user data across diverse contexts and underscores the critical need for stronger anonymization techniques and tailored privacy-preserving mechanisms for rating datasets and recommender systems. Full article
(This article belongs to the Section Information Systems and Data Management)
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<p>Grid search results for optimizing <math display="inline"><semantics> <mrow> <mi>m</mi> <mo>(</mo> <mi>x</mi> <mo>)</mo> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>u</mi> <mo>(</mo> <mi>x</mi> <mo>)</mo> </mrow> </semantics></math> parameters.</p>
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<p>Impact of dataset size on de-anonymization performance (F1-score) for the MovieLens–Book-Crossing dataset pair.</p>
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<p>Impact of dataset diversity on de-anonymization performance (F1-score).</p>
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<p>Impact of the user rating threshold on de-anonymization performance (F1-score) for the MovieLens–Book-Crossing dataset pair.</p>
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<p>Impact of data sparsity on de-anonymization performance (F1-score) for the MovieLens–Book-Crossing dataset pair.</p>
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<p>Impact of temporal variations on de-anonymization performance (relative change in F1-score) for the MovieLens–Book-Crossing dataset pair.</p>
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11 pages, 1325 KiB  
Article
Non-Fasting Plasma Triglycerides Are Positively Associated with Diabetes Mortality in a Representative US Adult Population
by Yutang Wang, Yan Fang, Xiulin Zhang and Na-Qiong Wu
Targets 2024, 2(2), 93-103; https://doi.org/10.3390/targets2020006 - 24 May 2024
Viewed by 406
Abstract
This study aimed to investigate whether non-fasting plasma triglycerides were associated with diabetes mortality. It included 7312 US adult participants. Diabetes mortality data were obtained via the linkage to National Death Index (NDI) records. Hazard ratios of non-fasting plasma triglycerides for diabetes mortality [...] Read more.
This study aimed to investigate whether non-fasting plasma triglycerides were associated with diabetes mortality. It included 7312 US adult participants. Diabetes mortality data were obtained via the linkage to National Death Index (NDI) records. Hazard ratios of non-fasting plasma triglycerides for diabetes mortality were assessed using Cox proportional hazards models, adjusting for age, gender, ethnicity, obesity, poverty–income ratio, education levels, physical activity, alcohol consumption, cigarette smoking status, survey period, hypercholesterolemia, hypertension, diabetes, and family history of diabetes. Among these participants, 1180 had diabetes. A total of 420 diabetes-caused deaths were recorded during a mean follow-up of 16.8 years. A 1-natural-log-unit increase in non-fasting plasma triglycerides was associated with a 41% higher diabetes mortality risk (hazard ratio, 1.41; 95% confidence interval, 1.19–1.67). Participants with non-fasting plasma triglycerides in the highest quintile, versus those in the lowest quintile, had a 141% higher diabetes mortality risk (hazard ratio, 2.41; 95% confidence interval, 1.46–3.97). The positive association of non-fasting plasma triglycerides with diabetes mortality was independent of diabetes status at the baseline. In conclusion, this study demonstrated that non-fasting plasma triglycerides were positively associated with diabetes mortality, independent of diabetes status at baseline. Non-fasting triglycerides may be a therapeutic target for diabetes-related complications. Full article
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<p>Scatter plots of non-fasting triglycerides with plasma glucose, blood hemoglobin A1c, and serum insulin. The plots on the left were from all the participants, the plots in the middle were from participants without diabetes, and the plots on the right were from participants with diabetes. B values represented correlation coefficients. <span class="html-italic">p</span> &lt; 0.05 for all the associations.</p>
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<p>ROC curves of non-fasting triglycerides to classify diabetes mortality. The optimal cutoff was 135.5 mg/dL in the whole cohort, with a sensitivity of 69%, a specificity of 57%, and an area under the curve (AUC) of 0.674. The optimal cutoff was 103.5 mg/dL for participants without diabetes, with a sensitivity of 80%, a specificity of 42%, and an AUC of 0.644. The optimal cutoff was 135.5 mg/dL for participants with diabetes, with a sensitivity of 73%, a specificity of 36%, and an AUC of 0.547. The blue line represented the ROC curve, and the red line represented the reference line.</p>
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<p>Kaplan–Meier curves of triglycerides for diabetes mortality. The blue line (the top line) represented participants with triglycerides below the optimal cutoff, and the red line (the bottom line) represented participants with triglycerides above the optimal cutoff.</p>
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8 pages, 215 KiB  
Communication
Ethical Considerations for Artificial Intelligence Applications for HIV
by Renee Garett, Seungjun Kim and Sean D. Young
AI 2024, 5(2), 594-601; https://doi.org/10.3390/ai5020031 - 7 May 2024
Viewed by 1044
Abstract
Human Immunodeficiency Virus (HIV) is a stigmatizing disease that disproportionately affects African Americans and Latinos among people living with HIV (PLWH). Researchers are increasingly utilizing artificial intelligence (AI) to analyze large amounts of data such as social media data and electronic health records [...] Read more.
Human Immunodeficiency Virus (HIV) is a stigmatizing disease that disproportionately affects African Americans and Latinos among people living with HIV (PLWH). Researchers are increasingly utilizing artificial intelligence (AI) to analyze large amounts of data such as social media data and electronic health records (EHR) for various HIV-related tasks, from prevention and surveillance to treatment and counseling. This paper explores the ethical considerations surrounding the use of AI for HIV with a focus on acceptability, trust, fairness, and transparency. To improve acceptability and trust towards AI systems for HIV, informed consent and a Federated Learning (FL) approach are suggested. In regard to unfairness, stakeholders should be wary of AI systems for HIV further stigmatizing or even being used as grounds to criminalize PLWH. To prevent criminalization, in particular, the application of differential privacy on HIV data generated by data linkage should be studied. Participatory design is crucial in designing the AI systems for HIV to be more transparent and inclusive. To this end, the formation of a data ethics committee and the construction of relevant frameworks and principles may need to be concurrently implemented. Lastly, the question of whether the amount of transparency beyond a certain threshold may overwhelm patients, thereby unexpectedly triggering negative consequences, is posed. Full article
(This article belongs to the Special Issue Standards and Ethics in AI)
11 pages, 7055 KiB  
Article
Comparative Analysis of Land and Air Temperature in Romania since A.D. 1961
by Ancuta Manea, Marius-Victor Birsan, Viorica Dima and Loredana-Elena Havriș
Land 2024, 13(5), 596; https://doi.org/10.3390/land13050596 - 29 Apr 2024
Viewed by 579
Abstract
Daily time series with continuous records of mean air and soil temperature from 127 meteorological stations—fairly distributed over the country—were used to compute monthly temperature trends, as well as changes in the timing of the first and the last frost days over Romania [...] Read more.
Daily time series with continuous records of mean air and soil temperature from 127 meteorological stations—fairly distributed over the country—were used to compute monthly temperature trends, as well as changes in the timing of the first and the last frost days over Romania since 1961. Results show that the frequency of the number of days with daily temperature averages below 0 °C in case of air and soil surface temperature is stable for most months, except for January, when (for both soil and air temperature), the number of days with a temperature below 0 °C is decreasing in the majority of the stations. The occurrence of the first day with (mean air and soil surface) temperatures below 0 °C, presents a delay in the south, south-east, and west, and an earlier occurrence in eastern and central regions. The occurrence of the last day with a mean air and soil surface temperature below 0 °C shows a stable trend for most stations (except for some small areas in the north, south-east and south-west of Romania). The regime of the land temperature is more stable, due to the physical characteristics of the soil, compared to the more versatile atmosphere. Linkages between thermal parameters and large-scale atmospheric circulation are also discussed. Full article
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<p>Spatial distribution of the selected weather stations over Romania. The Blue area represents the Black Sea.</p>
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<p>Magnitude (Sen’s slope) of trends of the frequency of the number of days with a mean soil surface temperature below 0 °C in January (<b>a</b>) and a mean air temperature below 0 °C for the same month (<b>b</b>), over the period 1961–2015. Elevations above 1100 m.a.s.l. are in white (no station with soil temperature data is available above 1100 m.a.s.l.; therefore, the spatial interpolation would not be relevant for these areas).</p>
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<p>Trends in the timing (occurrence) of the first day with a soil surface temperature below 0 °C (<b>a</b>) and of the first day with a mean air temperature below 0 °C (<b>b</b>), over the period 1961–2015. Elevations above 1100 m.a.s.l. are in white (since no station with soil temperature data is available above 1100 m.a.s.l., the spatial interpolation might not be relevant for these areas).</p>
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<p>Trends in the timing of the last day with a soil surface temperature below 0 °C (<b>a</b>) and of the last day with a mean air temperature below 0 °C (<b>b</b>), over the period 1961–2015. Elevations above 1100 m.a.s.l. are in white (since no station with soil temperature data is available above 1100 m.a.s.l., the spatial interpolation might not be relevant for these areas).</p>
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26 pages, 3951 KiB  
Article
The Impact of Air Pollution on Asthma Severity among Residents Living near the Main Industrial Complex in Oman: A Cross-Sectional Study
by Souad Mahmoud Al Okla, Fatima Al Zahra Khamis Al Rasbi, Hawida Said Al Marhubi, Shima Salim Al Mataani, Yusra Mohammed Al Sawai, Hasa Ibrahim Mohammed, Muna Ali Salim Al Mamari, Salwa Abdullah Abdulrahim Al Balushi and Abdul Qader Abbady
Int. J. Environ. Res. Public Health 2024, 21(5), 553; https://doi.org/10.3390/ijerph21050553 - 26 Apr 2024
Viewed by 1065
Abstract
Background: Asthma is a widespread chronic respiratory disease that poses a significant public health challenge. The current study investigated the associations between air pollution and asthma severity among individuals residing near the Sohar industrial port (SIP) in Oman. Despite the presence of multiple [...] Read more.
Background: Asthma is a widespread chronic respiratory disease that poses a significant public health challenge. The current study investigated the associations between air pollution and asthma severity among individuals residing near the Sohar industrial port (SIP) in Oman. Despite the presence of multiple major industrial complexes in Oman, limited knowledge regarding their impact on respiratory health is accredited. Hence, the primary objective of this study is to offer valuable insights into the respiratory health consequences of industrial air pollution in Al Batinah North. Methods: The state health clinics’ records for patient visits related to asthma were collected for the timeframe spanning 2014 to 2022. Exposure was defined as the distance from the SIP, Majan Industerial Area (MIA), and Sohar Industerial Zone (SIZ) to determine high-, intermediate-, and low-exposure zones (<6 km, 6–12 km and >12 km, respectively). Exposure effect modifications by age, gender, and smoking status were also examined. Results: The conducted cross-sectional study of 410 patients (46.1% males and 53.9% females) living in over 17 areas around SIP revealed that 73.2% of asthmatics were under 50 years old, with severity significantly associated with closeness to the port. Risk ratios were estimated to be (RR:2.42; CI95%: 1.01–5.78), (RR:1.91; CI95%: 1.01–3.6), and (RR:1.68; CI95%: 0.92–3.09) for SIP, MIP, and SIZ areas, respectively, compared to the control area. Falaj Al Qabail (6.4 km) and Majees (6 km) had the highest number of asthma patients (N 69 and N 72) and highest percentages of severe asthma cases among these patients (28% and 24%) with significant risk ratios (RR:2.97; CI95%: 1.19–7.45 and RR:2.55; CI95%: 1.00–6.48), correspondingly. Moreover, severe asthma prevalence peaked in the 25–50 age group (RR:2.05; CI95%: 1.26–3.33), and this linkage between asthma and age was much more pronounced in males than females. Smoking and exposure to certain contaminants (dust and smoke) also increased the risk of severe asthma symptoms, but their effects were less important in the high-risk zone, suggesting much more important risk factors. A neural network model accurately predicted asthma risk (94.8% accuracy), with proximity to SIP as the most influential predictor. Conclusions: This study highlights the high asthma burden near SIP, linked to port proximity, smoking, and wind direction as major risk factors. These findings inform vital public health policies to reduce air pollution and improve respiratory health in the region, prompting national policy review. Full article
(This article belongs to the Section Environmental Health)
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<p>Asthma severity percentages in the population and gender distribution. Percentages (%) of patients by asthma severity level (severe, moderate, and mild) in the whole population (all) or clustered by gender.</p>
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<p>The relationship between exposure zones and the average of asthma severity. The average asthma severity of the studied population is depicted in relation to the exposure zones that were categorized as follows: high (&lt;6 km), middle (6–12 km), and low (&gt;12 km). To calculate the averages, asthma severity levels were represented by numerical values: severe = 3, moderate = 2, and mild = 1. The average distance (km) for the locations of these patients within each of the three exposure zones is shown.</p>
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<p>The relationship between the severity of asthma and the average distance of patients’ residences from SIP. Average distance (km) was calculated for male, female, and entire populations (all) and categorized by different levels of asthma severity (severe, moderate/mild). The significance of the differences was determined by a Mann–Whitney U-test at <span class="html-italic">p</span> &lt; 0.05 *.</p>
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<p>Comprehensive map representing the dispersion of asthma patients around SIP. The map illustrates various regions where the patients reside. Each region is portrayed by a circle, the size of which corresponds to either the total number of patients (<b>A</b>) or the percentage of severe asthma cases (<b>B</b>) within that particular region. Additionally, the map highlights the placement of MIA and SIP.</p>
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<p>The relationship between the age ranges and the average asthma severity. Average asthma severity was calculated in the studied population (all, male, and female) in two location conditions (total and high-exposure zone &lt;6 km from SIP) after clustering according to ages (&lt;25, 25–50 and &gt;50 years). The significance of the differences was determined by a Mann–Whitney U-test at <span class="html-italic">p</span> &lt; 0.05 * and <span class="html-italic">p</span> &lt; 0.005 **.</p>
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<p>The relationship between asthma types and the average patient ages. Average patient ages in the studied population (all, male, and female) in two locations (total and high-exposure zone &lt; 6 km from SIP) clustered according to asthma level (severe, moderate, and mild). The significance of the differences was determined by a Mann–Whitney U-test at <span class="html-italic">p</span> &lt; 0.05 * and <span class="html-italic">p</span> &lt; 0.005 **.</p>
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<p>The relationship between patients’ gender, smoking status, and average asthma severity. The average asthma severity was calculated based on their smoking status: smokers, passive smokers, and non-smokers in the household.</p>
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<p>Relationship between contaminant exposure, asthma, and port proximity. Comparison of the percentages of “Yes” responses from the survey conducted on exposure to contaminants, particularly dust, incense, perfume, and smoke. The analysis is conducted for three groups: all patients (<b>A</b>), those with severe asthma (<b>B</b>), and those with severe asthma living within a 6 km radius of the port (<b>C</b>).</p>
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<p>Multilayer perceptron—architecture of neural network.</p>
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<p>Normalized importance analysis of input vectors. The inset table provides a comprehensive overview of the importance and corresponding normalized importance values for different indicators.</p>
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42 pages, 16821 KiB  
Article
Butterfly Effect in Cytarabine: Combined NMR-NQR Experiment, Solid-State Computational Modeling, Quantitative Structure-Property Relationships and Molecular Docking Study
by Jolanta Natalia Latosińska, Magdalena Latosińska, Janez Seliger, Veselko Žagar and Tomaž Apih
Pharmaceuticals 2024, 17(4), 445; https://doi.org/10.3390/ph17040445 - 29 Mar 2024
Cited by 2 | Viewed by 1343
Abstract
Cytarabine (Ara-C) is a synthetic isomer of cytidine that differs from cytidine and deoxycytidine only in the sugar. The use of arabinose instead of deoxyribose hinders the formation of phosphodiester linkages between pentoses, preventing the DNA chain from elongation and interrupting the DNA [...] Read more.
Cytarabine (Ara-C) is a synthetic isomer of cytidine that differs from cytidine and deoxycytidine only in the sugar. The use of arabinose instead of deoxyribose hinders the formation of phosphodiester linkages between pentoses, preventing the DNA chain from elongation and interrupting the DNA synthesis. The minor structural alteration (the inversion of hydroxyl at the 2′ positions of the sugar) leads to change of the biological activity from anti-depressant and DNA/RNA block builder to powerful anti-cancer. Our study aimed to determine the molecular nature of this phenomenon. Three 1H-14N NMR-NQR experimental techniques, followed by solid-state computational modelling (Quantum Theory of Atoms in Molecules, Reduced Density Gradient and 3D Hirshfeld surfaces), Quantitative Structure–Property Relationships, Spackman’s Hirshfeld surfaces and Molecular Docking were used. Multifaceted analysis—combining experiments, computational modeling and molecular docking—provides deep insight into three-dimensional packing at the atomic and molecular levels, but is challenging. A spectrum with nine lines indicating the existence of three chemically inequivalent nitrogen sites in the Ara-C molecule was recorded, and the lines were assigned to them. The influence of the structural alteration on the NQR parameters was modeled in the solid (GGA/RPBE). For the comprehensive description of the nature of these interactions several factors were considered, including relative reactivity and the involvement of heavy atoms in various non-covalent interactions. The binding modes in the solid state and complex with dCK were investigated using the novel approaches: radial plots, heatmaps and root-mean-square deviation of the binding mode. We identified the intramolecular OH···O hydrogen bond as the key factor responsible for forcing the glycone conformation and strengthening NH···O bonds with Gln97, Asp133 and Ara128, and stacking with Phe137. The titular butterfly effect is associated with both the inversion and the presence of this intramolecular hydrogen bond. Our study elucidates the differences in the binding modes of Ara-C and cytidine, which should guide the design of more potent anti-cancer and anti-viral analogues. Full article
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Graphical abstract

Graphical abstract
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<p>Molecular structure of nucleoside with a sugar group (glycone) bonded to a non-sugar (aglycone) via glycone-N-aglycone bridge (β-N1-glycosidic bond); ϕ—the rotation angle C(2)N(1)CO indicated by the upper red arrow. The lower red arrow indicates the difference in the glycone part: D-arabinose vs. ribose).</p>
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<p>Structural formula of (<b>a</b>) Cytarabine (Cytosine arabinoside; Cytosine-1-β-D-arabinofuranoside; Ara-C) and closely related compounds (<b>b</b>) Cytidine (CTP), (<b>c</b>) 2′-deoxycytidine (dCTP), (<b>d</b>) 3′-deoxycytidine, (<b>e</b>) 3′-deoxy-3′,4′-didehydrocytidine, (<b>f</b>) 2′,3′-dideoxycytidine (ddCTP, Zalcitabine), (<b>g</b>) 5-azacytidine (5-AzaC, Vidaza) and (<b>h</b>) Gemcitabine (2′, 2′-difluoro-2′deoxycytidine, dFdC, Gem/Gemzar).</p>
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<p>Structural formula of (<b>a</b>) Cytarabine (Cytosine arabinoside; Cytosine-1-β-D-arabinofuranoside; Ara-C) and closely related compounds (<b>b</b>) Cytidine (CTP), (<b>c</b>) 2′-deoxycytidine (dCTP), (<b>d</b>) 3′-deoxycytidine, (<b>e</b>) 3′-deoxy-3′,4′-didehydrocytidine, (<b>f</b>) 2′,3′-dideoxycytidine (ddCTP, Zalcitabine), (<b>g</b>) 5-azacytidine (5-AzaC, Vidaza) and (<b>h</b>) Gemcitabine (2′, 2′-difluoro-2′deoxycytidine, dFdC, Gem/Gemzar).</p>
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<p>The experimentally determined <sup>14</sup>N NQR spectrum in Ara-C (<b>top</b>) and positions of the resonance lines in the spectra of Ara-C and reference cytidine.</p>
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<p>The correlation between the experimental and calculated (GGA/RPBE level, solid) NQR frequencies.</p>
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<p>The intermolecular interactions visualized in the d<sub>norm</sub> surface projected over 3D Hirshfeld Surfaces in a red-white-blue scheme (red: negative, white: zero, blue: positive), with red representing small range contacts such as hydrogen bonds, white representing contacts of approximately van der Waals radii, and blue representing the remaining, considerably longer, connections: (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine, (<b>d</b>) 2′-deoxycytidine (αIrm) (<b>e</b>) 2′deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine.</p>
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<p>Heatmap visualizing the percentage contributions to the 3D Hirshfeld surface area calculated for each pair of species. The red-yellow-blue scheme, with dark red indicating strong interactions and dark blue indicating very weak ones was used.</p>
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<p>Difference heat map visualizing relative percentage contributions to the 3D Hirshfeld surface area calculated for each pair of species (Ara-C is a reference). The difference heat map visualizes the differences in the percentages in a red-yellow-blue scheme, where red indicates an increase and blue indicates a decrease.</p>
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<p>The total 2D molecular fingerprints: (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine, (<b>d</b>) 2′-deoxycytidineI form) (<b>e</b>) 2′-deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine. (The white color represents the contacts nearer to sum of the vdW radii, while red and blue color indicates shorter and longer contacts).</p>
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<p>The 2D molecular fingerprints limited to HH interactions (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine, (<b>d</b>) 2′-deoxycytidI (α form) (<b>e</b>) 2′deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine. (The white color represents the contacts nearer to sum of the vdW radii, while red and blue color indicates shorter and longer contacts).</p>
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<p>The 2D molecular fingerprints limited to OH interactions (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine, (<b>d</b>) 2′deoxItidine (α form) (<b>e</b>) 2′deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine. (The white color represents the contacts nearer to sum of the vdW radii, while red and blue color indicates shorter and longer contacts).</p>
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<p>The 2D molecular fingerprints limited to NH interactions (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine, (<b>d</b>) 2′-deoxycytidine (α form) (<b>e</b>) 2′deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine. (The white color represents the contacts nearer to sum of the vdW radii, while red and blue color indicates shorter and longer contacts).</p>
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<p>The 2D molecular fingerprints limited to CH interactions: (<b>a</b>) Ara-C, (<b>b</b>) α-cytidine, (<b>c</b>) β-cytidine,I), (<b>d</b>) 2′-deoxycytidine (α form) (<b>e</b>) 2′-deoxycytidine (β form), (<b>f</b>) 3′-deoxycytidine, (<b>g</b>) 2′,3′-dideoxycytidine (Zalcitabine), (<b>h</b>) 5-aza-2′-deoxycytidine (Decitabine) and (<b>i</b>) cytosine. (The white color represents the contacts nearer to sum of the vdW radii, while red and blue color indicates shorter and longer contacts).</p>
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<p>The best docking poses of the ligand in complexes with dCK protein. The protein backbone is represented as a cartoon, the binding cavity residues are shown as thin sticks and the docked ligands are shown as color sticks (Ara-C in green, 2′-deoxycytidine in yellow, cytidine in cyan, 5-azacytidine in magenta, 3′-deoxycytidine in white, Zalcitabine in blue, Decitabine in dark green and 3′-deoxy,3′,4′-didehydrocytidine in red). The hydrogen bonds linking Ara-C to the dCK residues are shown using dashed green lines.</p>
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<p>The radar plot visualizing the protein-ligand binding mode (Ara-C*—native ligand).</p>
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<p>The binding strength of the ligands to individual residues (Ara-C* 1P5Z, 2-deoxycytidine* P160, 2-deoxycytidine** P161, Gemcitabine* P162 are listed as reference). The heat map visualizes the binding mode in red-yellow-blue scheme, with dark red indicating strong interactions and dark blue indicating very weak ones.</p>
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<p>Difference heat map revealing the differences in the binding strength of ligands to individual residues (Ara-C* 1P5Z, 2-deoxycytidine* P160, 2-deoxycytidine** P161, Gemcitabine* P162 are listed as reference). Thered-yellow-blue scheme, where red indicates bond strengthening and blue indicates bond weakening was used.</p>
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<p>The binding mode in Ara-C–dCK complex (hydrogen bonds are depicted in blue, hydrophoblic contacts in green and π···π interactions in cyan).</p>
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<p>The correlation between relative binding mode (RMSD_BM) and the relative reactivity R<sup>+</sup> and R<sup>−</sup>.</p>
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<p>The correlation between relative binding affinity and the relative reactivity R+ and R−.</p>
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25 pages, 2206 KiB  
Review
The Relationship of Corporate Social Responsibility with Business Performance—A Bibliometric Literature Review
by Emmanuel Jeffrey Dzage and György Norbert Szabados
Sustainability 2024, 16(7), 2637; https://doi.org/10.3390/su16072637 - 22 Mar 2024
Cited by 1 | Viewed by 2272
Abstract
The significant role of corporate social responsibility (CSR) in achieving sustainability and in meeting the expectations of stakeholders has been well documented. Using a collection of 2173 publications on CSR and its connections with business performance, this study conducted a bibliometric investigation using [...] Read more.
The significant role of corporate social responsibility (CSR) in achieving sustainability and in meeting the expectations of stakeholders has been well documented. Using a collection of 2173 publications on CSR and its connections with business performance, this study conducted a bibliometric investigation using the Systematic Literature Network Analysis (SLNA) technique combined with network visualizations to demonstrate the current research trends, most topical themes and the developing areas of interest in the growing field of CSR and its linkages with business performance for an approximate period from 2004 to 2023 as published in the Scopus database of two decades. The goal was to explore the research gaps by analyzing the most cited authors and most impactful publications by year, location, subject area and document type. The study also outlined the trends by topic prevalence, commonly used keywords and citation networks based on co-occurrence and co-authorship to identify the current thematic gaps. The results reveal a mild rate of growth in scholarly interest around the field of CSR and business performance until 2022, where a manifold increase in publications was recorded. An expanding focus on human, social and organizational behavior, economic systems, financial and social performance, leadership, stakeholder management and management science was identified, although there is a scarcity of studies around issues regarding developing countries, climate change, CSR disclosure and small businesses. These findings demonstrate the current state of the research and offer interesting insights and timely research directions as a roadmap for future studies. Full article
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<p>Illustration of the SLNA methodology. Source: authors (2024).</p>
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<p>Illustration of the Systematic Literature Review Process. Source: authors (2024).</p>
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<p>Number of publications by year.</p>
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<p>Publications by continent.</p>
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<p>Number of publications by subject area.</p>
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<p>Publication by type of document.</p>
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<p>Publication by authors.</p>
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<p>Author network visualization.</p>
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<p>Co-occurrence network overlay based on author keywords.</p>
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<p>Density visualization based on author keywords.</p>
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17 pages, 288 KiB  
Article
Using Primary Care and Emergency Department Datasets for Researching Violence Victimisation in the UK: A Methodological Review of Four Sources
by Anastasia Fadeeva, Estela Capelas Barbosa, Alex Walker and Sally McManus
Soc. Sci. 2024, 13(3), 147; https://doi.org/10.3390/socsci13030147 - 5 Mar 2024
Viewed by 1417
Abstract
Violence is recognised as a cause of health harm, but it is not consistently or adequately captured in healthcare data systems. While administrative health records could be valuable sources of information for measuring violence, they remain underutilised in violence-related research. The present research [...] Read more.
Violence is recognised as a cause of health harm, but it is not consistently or adequately captured in healthcare data systems. While administrative health records could be valuable sources of information for measuring violence, they remain underutilised in violence-related research. The present research aims to examine the suitability of violence indicators in emergency care, primary care, and linked healthcare datasets. Descriptive analyses were conducted with the 2015/16 Hospital Episode Statistics Accident and Emergency (HES A&E) and the 2021/22 Emergency Care Data Set (ECDS). The potential of the Clinical Practice Research Datalink (CPRD) and the South Wales Violence Surveillance dataset (a police and emergency department (ED) dataset linked by Public Health Wales) were shown using available evidence. Among the discussed datasets, the South Wales Violence Surveillance dataset has the most detail about violent acts and their contexts, while the CPRD includes a more extensive range of socioeconomic factors about patients and extensive linkage with other datasets. Currently, detailed safeguarding information is routinely removed from the ECDS extracts provided to researchers, limiting its utility for violence research. In the HES A&E, only physical violence was consistently recorded. Addressing these issues has the potential to improve the use of health administrative data in research on violence. Full article
(This article belongs to the Special Issue New Perspectives on Measuring Interpersonal Violence)
37 pages, 6316 KiB  
Review
Interaction between the Westerlies and Asian Monsoons in the Middle Latitudes of China: Review and Prospect
by Xiang-Jie Li and Bing-Qi Zhu
Atmosphere 2024, 15(3), 274; https://doi.org/10.3390/atmos15030274 - 25 Feb 2024
Viewed by 1077
Abstract
The westerly circulation and the monsoon circulation are the two major atmospheric circulation systems affecting the middle latitudes of the Northern Hemisphere (NH), which have significant impacts on climate and environmental changes in the middle latitudes. However, until now, people’s understanding of the [...] Read more.
The westerly circulation and the monsoon circulation are the two major atmospheric circulation systems affecting the middle latitudes of the Northern Hemisphere (NH), which have significant impacts on climate and environmental changes in the middle latitudes. However, until now, people’s understanding of the long-term paleoenvironmental changes in the westerly- and monsoon-controlled areas in China’s middle latitudes is not uniform, and the phase relationship between the two at different time scales is also controversial, especially the exception to the “dry gets drier, wet gets wetter” paradigm in global warming between the two. Based on the existing literature data published, integrated paleoenvironmental records, and comprehensive simulation results in recent years, this study systematically reviews the climate and environmental changes in the two major circulation regions in the mid-latitudes of China since the Middle Pleistocene, with a focus on exploring the phase relationship between the two systems at different time scales and its influencing mechanism. Through the reanalysis and comparative analysis of the existing data, we conclude that the interaction and relationship between the two circulation systems are relatively strong and close during the warm periods, but relatively weak during the cold periods. From the perspective of orbital, suborbital, and millennium time scales, the phase relationship between the westerly and Asian summer monsoon (ASM) circulations shows roughly in-phase, out-of-phase, and anti-phase transitions, respectively. There are significant differences between the impacts of the westerly and ASM circulations on the middle-latitude regions of northwest China, the Qinghai–Tibet Plateau, and eastern China. However, under the combined influence of varied environmental factors such as BHLSR (boreal high-latitude solar radiation), SST (sea surface temperature), AMOC (north Atlantic meridional overturning circulation), NHI (Northern Hemisphere ice volume), NAO (North Atlantic Oscillation), ITCZ (intertropical convergence zone), WPSH (western Pacific subtropical high), TIOA (tropical Indian Ocean anomaly), ENSO (El Niño/Southern Oscillation), CGT/SRP (global teleconnection/Silk Road pattern), etc., there is a complex and close coupling relationship between the two, and it is necessary to comprehensively consider their “multi-factor’s joint-action” mechanism and impact, while, in general, the dynamic mechanisms driving the changes of the westerly and ASM circulations are not the same at different time scales, such as orbital, suborbital, centennial to millennium, and decadal to interannual, which also leads to the formation of different types of phase relationships between the two at different time scales. Future studies need to focus on the impact of this “multi-factor linkage mechanism” and “multi-phase relationship” in distinguishing the interaction between the westerly and ASM circulation systems in terms of orbital, suborbital, millennium, and sub-millennium time scales. Full article
(This article belongs to the Special Issue Extreme Climate in Arid and Semi-arid Regions)
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<p>Distribution and location of paleoenvironmental records cited in the paper (the red line represents the approximate boundary line between the Westerly and monsoon circulations).</p>
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<p>Paleo-sedimentary records from the areas controlled by the Westerly and monsoon circulations since 1200 ka B.P. (<b>A</b>) The percentage of grain size &gt; 63 μm in the loess sediment profile on the northern slope of the Tianshan Mountains [<a href="#B47-atmosphere-15-00274" class="html-bibr">47</a>]. (<b>B</b>) Variation of δ<sup>18</sup>O content in carbonates in the core of the Qaidam Basin [<a href="#B45-atmosphere-15-00274" class="html-bibr">45</a>]. (<b>C</b>) Variation of δ<sup>18</sup>O content in carbonates in the cores from the hinterland of the Badanjilin Desert [<a href="#B44-atmosphere-15-00274" class="html-bibr">44</a>]. (<b>D</b>) Particle size variation of loess sediments in the Lingtai Section of the Loess Plateau [<a href="#B44-atmosphere-15-00274" class="html-bibr">44</a>]. (<b>E</b>) Variation of δ<sup>18</sup>O content in carbonates of loess sediments in the Lantian Section of the Loess Plateau [<a href="#B33-atmosphere-15-00274" class="html-bibr">33</a>].</p>
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<p>Comparison of the magnetic susceptibility records between the Westerly- and ASM-dominated regions during the Last Interglacial period. (<b>A</b>) Changes in magnetic susceptibility recorded in the JZT (Jiuzhoutai) loess sediment profiles on the Loess Plateau of China during the Last Interglacial Period (χARM to SIRM ratio, [<a href="#B2-atmosphere-15-00274" class="html-bibr">2</a>]. (<b>B</b>) Changes in frequency magnetic susceptibility in the KS (Kesang) loess sediment profiles in the Yili Basin, northwest China, during the Last Interglacial period [<a href="#B2-atmosphere-15-00274" class="html-bibr">2</a>].</p>
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<p>Comparison of records between the Westerly and monsoon regions during the LGP. (<b>a</b>) NGRIP Ice Core δ<sup>18</sup>O records [<a href="#B79-atmosphere-15-00274" class="html-bibr">79</a>]. (<b>b</b>) Changes of quartz content in the Zhaosu section in Yili area dominated by the Westerly climate [<a href="#B48-atmosphere-15-00274" class="html-bibr">48</a>]. (<b>c</b>) The percentage variation of sediment grain size &lt; 10 μm in the Zhaosu section [<a href="#B48-atmosphere-15-00274" class="html-bibr">48</a>]. (<b>d</b>) The percentage variation of sediment grain size &gt; 40 μm in the Yuanbao section in the monsoon region of South China [<a href="#B53-atmosphere-15-00274" class="html-bibr">53</a>]. (<b>e</b>) δ<sup>18</sup>O variation of stalagmites in the monsoon region of East China [<a href="#B32-atmosphere-15-00274" class="html-bibr">32</a>]. The arrows indicate the pronounced increase (or decrease) with approximately monotonic trend of the proxies in the corresponding time period.</p>
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<p>Comparison of paleoenvironmental records between the ASM region and the arid Central Asian region (ACA, the Westerly region) since the Holocene (cited from [<a href="#B4-atmosphere-15-00274" class="html-bibr">4</a>]). (<b>a</b>) Dongge Cave D4, China (after [<a href="#B84-atmosphere-15-00274" class="html-bibr">84</a>]); (<b>b</b>) Dongge Cave DA, China (after [<a href="#B85-atmosphere-15-00274" class="html-bibr">85</a>]); (<b>c</b>) Shanbao Cave SB10-26, China (after [<a href="#B86-atmosphere-15-00274" class="html-bibr">86</a>]); (<b>d</b>) Qunf Cave, Oman (after [<a href="#B87-atmosphere-15-00274" class="html-bibr">87</a>]); (<b>e</b>) Hongyuan Peat, and (<b>f</b>) Hani Peat, China (after [<a href="#B87-atmosphere-15-00274" class="html-bibr">87</a>,<a href="#B88-atmosphere-15-00274" class="html-bibr">88</a>]); (<b>g</b>) Siling Lake, China (after [<a href="#B89-atmosphere-15-00274" class="html-bibr">89</a>]); (<b>h</b>) Qinghai Lake (after [<a href="#B90-atmosphere-15-00274" class="html-bibr">90</a>]); and (<b>i</b>) Arabian Sea (after [<a href="#B91-atmosphere-15-00274" class="html-bibr">91</a>]. All curves in panels (<b>a</b>–<b>i</b>) show the same direction of moisture change with increasing moisture upward. The long-term trend for each proxy curve is showed by smooth dashed line. Summer insolation at 30°N ((<b>j</b>) after [<a href="#B92-atmosphere-15-00274" class="html-bibr">92</a>]) and synthesized Holocene effective-moisture evolution line (<b>k</b>) after [<a href="#B4-atmosphere-15-00274" class="html-bibr">4</a>] are also shown. The out-of-phase relationship of Holocene moisture evolution between monsoon Asia and ACA is illustrated in (<b>l</b>).</p>
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<p>Changes in precipitation over the QTP in recent period as reflected by ice core records (cited from [<a href="#B31-atmosphere-15-00274" class="html-bibr">31</a>]). (<b>a</b>) Guiya Ice core. (<b>b</b>) Dunde Ice core. (<b>c</b>) Puruogangri Ice core. (<b>d</b>) Dasuopu Ice core.</p>
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<p>Precipitation seesaw phenomenon in the eastern (ENWC) and western (WNWC) parts of Northwest China (NWC) (modified after [<a href="#B10-atmosphere-15-00274" class="html-bibr">10</a>]). (<b>a</b>) Regional division of ENWC and WNWC and the precipitation tendency distribution of stations in the same period. (<b>b</b>) The tendency distribution of variation of precipitation anomaly percentage in ENWC and WNWC during flood season from 1961 to 2016. The difference distribution of precipitation (<b>c</b>) and rainy days (<b>d</b>) in ENWC and WNWC under the WA-EH and WH-EA styles (the WA-EH style means precipitation increases in ENWC and decreases in WNWC, while the WH-EA style is the opposite). The comparison of EASM index and precipitation variation in ENWC (<b>e</b>) and the comparison of WI and precipitation variation in WNWC (<b>f</b>).</p>
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<p>A comprehensive comparison of the Westerlies with multiple global environmental records at the Holocene suborbital scale (cited from [<a href="#B4-atmosphere-15-00274" class="html-bibr">4</a>]). (<b>a</b>) Synthesized Holocene mean moisture index in arid Central Asia (ACA); (<b>b</b>) correlation with Northern Hemisphere summer insolation [<a href="#B92-atmosphere-15-00274" class="html-bibr">92</a>]; (<b>c</b>) sea surface temperature (SST) of the North Atlantic region [<a href="#B121-atmosphere-15-00274" class="html-bibr">121</a>]; (<b>d</b>) SST of the Norwegian Sea [<a href="#B122-atmosphere-15-00274" class="html-bibr">122</a>]; (<b>e</b>) air temperature from GRIP ice-core [<a href="#B123-atmosphere-15-00274" class="html-bibr">123</a>]; and (<b>f</b>) relative sea-level change from Barbados [<a href="#B124-atmosphere-15-00274" class="html-bibr">124</a>].</p>
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<p>Changes in solar radiation in the early Holocene in the NH led to climatic drought in the Westerly region [<a href="#B7-atmosphere-15-00274" class="html-bibr">7</a>].</p>
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<p>A comparison between the records of the Asian summer monsoon and North Atlantic abrupt events (cited from [<a href="#B132-atmosphere-15-00274" class="html-bibr">132</a>]). (<b>a</b>–<b>d</b>) Centennial components of (<b>b</b>) Zr/Rb and (<b>c</b>) Rb/Sr with (<b>a</b>) the North Atlantic HSG [<a href="#B133-atmosphere-15-00274" class="html-bibr">133</a>] and (<b>d</b>) atmosphere 14C record [<a href="#B134-atmosphere-15-00274" class="html-bibr">134</a>]. The purple and blue bars indicate abrupt monsoon events. The numbers 1–8 in figure (<b>a</b>) indicate the selected event cycles which are used for the spectral analyses of periodicity in figure (<b>e</b>–<b>l</b>). Plots (<b>e</b>–<b>l</b>) show the spectra of the proxy records during the (<b>e</b>–<b>h</b>) Early and (<b>i</b>–<b>l</b>) Late Holocene [<a href="#B132-atmosphere-15-00274" class="html-bibr">132</a>]. Spectral peaks that are above the 80% confidence levels (black lines) are marked. The grey vertical bands indicate the most significant cycle [<a href="#B132-atmosphere-15-00274" class="html-bibr">132</a>].</p>
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17 pages, 3561 KiB  
Case Report
Feline Chronic Gingivostomatitis Diagnosis and Treatment through Transcriptomic Insights
by Maria Soltero-Rivera, Claire Shaw, Boaz Arzi, Milinda Lommer and Bart C. Weimer
Pathogens 2024, 13(3), 192; https://doi.org/10.3390/pathogens13030192 - 21 Feb 2024
Viewed by 2162
Abstract
Feline chronic gingivostomatitis (FCGS) is a debilitating inflammatory oral mucosal disease with a multifactorial etiology. The clinical diagnosis of FCGS is made based on inspection of severe inflammatory lesions and histological confirmation rather than a molecular diagnostic outcome. This gap limits the ability [...] Read more.
Feline chronic gingivostomatitis (FCGS) is a debilitating inflammatory oral mucosal disease with a multifactorial etiology. The clinical diagnosis of FCGS is made based on inspection of severe inflammatory lesions and histological confirmation rather than a molecular diagnostic outcome. This gap limits the ability to provide an early diagnosis. In this report, we seek to provide additional diagnostic tools using genomics to aid in providing clinically relevant information. The use of in-depth diagnostic tools, like transcriptomics of diseased tissues, to diagnose FCGS and stratify patients into predictive treatment response groups would dramatically improve both clinical decisions and patient outcomes. In this study, we addressed the gap in diagnostic options using transcriptomic analysis of caudal oral mucosal swab specimens coupled to detailed medical record linkage of FCGS-affected cats undergoing tooth extractions and in some cases administration of mesenchymal stromal cells (MSCs). To better identify markers of disease and potential response to treatment, the transcriptomes of FCGS-afflicted cats were compared to those of healthy cats and those with chronic periodontitis to clearly establish diagnostic biomarker signal transduction connections. Phosphatidylinositol 3-kinase/Ak strain transforming (PI3K/AKT) and stress-activated protein kinases/Jun N-terminal kinase (SAP/JNK) signaling pathways were significantly differentially regulated in FCGS-afflicted cats. Activation of these pathways also differed in the treatment response groups. In conjunction, the enzymes Caspase 4 (CASP4), matrix metalloproteinase-8 (MMP8), and prostaglandin-endoperoxide synthase 2 (PTGS2) were identified as potential biomarkers for the prediction of treatment response outcomes. The observations in the case study support the use of transcriptomics of FCGS patients to contribute to improved molecular diagnostics for the diagnosis and treatment of FCGS. Full article
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<p>Clinical pictures of feline chronic gingivostomatitis (FCGS)-afflicted oral cavities. (<b>Left</b>) Manifestation of FCGS at time of diagnosis with all teeth present. (<b>Right</b>) FCGS oral lesions in refractory patient despite undergoing full-tooth extractions.</p>
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<p>Method schematic detailing the sample numbers and basic collection and sequencing scheme. A total of 42 unique samples were collected, with 9 more samples derived from the same sampling population at contralateral locations or times. Healthy cats were those with no diagnosed dental disease or with mild to moderate periodontitis. Feline chronic gingivostomatitis (FCGS) cats were those with gingivostomatitis and underwent either tooth extraction or mesenchymal stromal cell (MSC) treatment after not responding to extractions. Swabs were taken from the oral mucosa lateral to the palatoglossal folds. mRNA was extracted from the swabs, sequenced, and analyzed.</p>
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<p>Overview of differentially expressed genes in cats with feline chronic gingivostomatitis (FCGS) compared to healthy controls. IPA (Ingenuity Pathway Analysis) was used to determine the top significantly (−log10<span class="html-italic">p</span> &gt; 10) expressed pathways in FCGS patients as compared to healthy samples (<b>top</b>). Coloration represents the Z-score of each pathway; orange denoting positive values and gray showing no clear activity pattern in that pathway, with color intensity positively correlated to Z-score. General expression patterns across healthy and FCGS samples were also evaluated and displayed using a heatmap (<b>bottom</b>). R (version 4.2.2) package pheatmap (version 1.0.12), with Euclidean distance clustering of both genes and samples with log2 normalized read counts as input data was used to generate the map.</p>
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<p>Overview of differentially expressed genes in patients that responded to extractions (<b>top</b>) and those that underwent mesenchymal stromal cell (MSC) therapy (<b>bottom</b>). Ingenuity Pathway Analysis (IPA) was used to determine the top significantly (−log10<span class="html-italic">p</span> &gt; 10) expressed pathways in extraction responsive vs. non-responsive cats and MSC-treated vs. extraction-responding cats. Coloration represents the Z-score of each pathway; orange denoting positive values, blue denoting negative values, and gray showing no clear activity pattern in that pathway, with color intensity positively correlated to Z-score. General expression patterns across healthy and feline chronic gingivostomatitis (FCGS) samples was also evaluated by heatmap. R (version 4.2.2) package pheatmap (version 1.0.12) with Euclidean distance clustering of both genes and samples with log2 normalized read counts as input data was used to generate the map.</p>
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<p>Canonical signaling pathways from gene and pathway enrichment (IPA) comparing feline chronic gingivostomatitis (FCGS) samples to healthy samples. Significance cutoff of -log10<span class="html-italic">p</span> &gt;10. The top axis represents the percentage of the pathway annotated in the gene expression data set that was downregulated (teal), upregulated (red), or not represented in the data (white). The total gene count in each pathway is noted on the right-hand side of the figure. The bottom axis represents the significance of each pathway and corresponds to the orange line on each figure, and pathways are ordered from most significant to least from top to bottom.</p>
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<p>Canonical signaling pathways from Ingenuity Pathway Analysis (IPA) comparing extraction-responsive samples to non-responder samples (<b>left</b>) and those that received mesenchymal stromal cells (MSC) treatment after extraction compared to those that received extractions only (<b>right</b>). Significance cutoff of -log10<span class="html-italic">p</span> &gt;10. The top axis represents percentage of the pathway annotated in the gene expression data set that was downregulated (teal), upregulated (red), or not represented in the data (white). The total gene count in each pathway is noted on the right-hand side of the figure. The bottom axis represents the significance of each pathway and corresponds to the orange line on each figure, and pathways are order from most significant to least from top to bottom.</p>
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<p>Ingenuity Pathway Analysis (IPA) pathway of stress-activated protein kinases/Jun N-terminal kinase (SAP/JNK) signaling overlayed with gene expression data from extraction and mesenchymal stromal cell (MSC) treatment samples. Significance cutoff of −log10P &gt; 1.3, and data shown as log2 fold change expression. Red represents increased measurement of that gene, while teal indicates decreased measurement. Orange and blue overlays represent predicted activation or inhibition, respectively. (<b>Top</b>) Comparison of differentially expressed genes from patients that responded to extraction treatment versus those who had no successful therapeutic response to extractions. (<b>Bottom</b>) Comparison of differentially expressed genes from non-responder extractions patients that underwent MSC therapy versus patients that underwent only extraction therapy.</p>
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11 pages, 3329 KiB  
Article
Breaking Dynamic Behavior in 3D Covalent Organic Framework with Pre-Locked Linker Strategy
by Xiaohong Chen, Chengyang Yu, Yusran Yusran, Shilun Qiu and Qianrong Fang
Nanomaterials 2024, 14(4), 329; https://doi.org/10.3390/nano14040329 - 7 Feb 2024
Viewed by 1111
Abstract
Due to their large surface area and pore volume, three-dimensional covalent organic frameworks (3D COFs) have emerged as competitive porous materials. However, structural dynamic behavior, often observed in imine-linked 3D COFs, could potentially unlock their potential application in gas storage. Herein, we showed [...] Read more.
Due to their large surface area and pore volume, three-dimensional covalent organic frameworks (3D COFs) have emerged as competitive porous materials. However, structural dynamic behavior, often observed in imine-linked 3D COFs, could potentially unlock their potential application in gas storage. Herein, we showed how a pre-locked linker strategy introduces breaking dynamic behavior in 3D COFs. A predesigned planar linker-based 3,8-diamino-6-phenylphenanthridine (DPP) was prepared to produce non-dynamic 3D JUC-595, as the benzylideneamine moiety in DPP locked the linker flexibility and restricted the molecular bond rotation of the imine linkages. Upon solvent inclusion and release, the PXRD profile of JUC-595 remained intake, while JUC-594 with a flexible benzidine linker experienced crystal transformation due to framework contraction–expansion. As a result, the activated JUC-595 achieved higher surface areas (754 m2 g−1) than that of JUC-594 (548 m2 g−1). Furthermore, improved CO2 and CH4 storages were also seen in JUC-595 compared with JUC-594. Impressively, JUC-595 recorded a high normalized H2 storage capacity that surpassed other reported high-surface area 3D COFs. This works shows important insights on manipulating the structural properties of 3D COF to tune gas storage performance. Full article
(This article belongs to the Section Inorganic Materials and Metal-Organic Frameworks)
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<p>The simulated and experimental PXRD patterns of (<b>a</b>) JUC-594 and (<b>b</b>) JUC-595.</p>
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<p>PXRD profiles of solvated (hexane) (<b>a</b>) JUC-594 and (<b>b</b>) JUC-595 upon evaporating hexane molecule in room temperature for 1–20 min.</p>
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<p>Porosity analysis of JUC-594 and JUC-595. (<b>a</b>) N<sub>2</sub> adsorption–desorption isotherm comparison of JUC-594 and JUC-595. Pore size distribution of (<b>b</b>) JUC-594 and (<b>c</b>) JUC-595 calculated by NLDFT method.</p>
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<p>CO<sub>2</sub> adsorption isotherms for (<b>a</b>) JUC-594, (<b>b</b>) JUC-595 and CH<sub>4</sub> adsorption isotherms for (<b>c</b>) JUC-594, (<b>d</b>) JUC-595.</p>
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<p>H<sub>2</sub> adsorption isotherms of JUC-594 (<b>a</b>), JUC-595 (<b>b</b>) at 77 and 78 K and the experimental H<sub>2</sub> <span class="html-italic">Q<sub>st</sub></span> curve for JUC-594 (<b>c</b>) and JUC-595 (<b>d</b>).</p>
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<p>Rational design of non-dynamic 3D COFs via a locked linker strategy. Designs JUC-594 and JUC-595. (<b>a</b>) Design and synthesis of dynamic JUC-594 and non-dynamic JUC-595 employing flexible BD and planar DPP linkers. (<b>b</b>) The 3D representative crystal models of JUC-594 (top) and JUC-594 (down) with 2-fold dia net viewed along c axis.</p>
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